Rh6CG391900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000290
Physical Location & Seq
Reverse (-)
57810556 .. 57824166
13611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG391900.1

Sequence Viewer

Length: 1065 bp
ATGGACAACAATAATAATGTCCGTATGCCAAAGAAATTGACAAGGTGTCACTGCCCATGTTTGTTCAAGGTAGCAATGGGTTCCAAGAAGGGAATTCGCAAATCTCCAAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTTTGTATCAGCCAACACTGTCACGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTGGTTACCATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAATTTTAAAGTGACATACACCGACACGGGCAATCTAAATGGATCAATAAGGCACACTCTACAGTCTTATATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGACGTGGACGGTGACTTGAAGGATAAACTTTGGCTCGATGTTAAGAAAAAGACTTTGCTTGAAGGAGAGGTAATAGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGTAAAAATGGGGACATAGATGAAGAGGCTAGAGTTGTGGTGACAAAGATACATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGTGGTGGACAAAGCAAGCAAAATCTGAAGTTCACTCCACAGTTCCCAAGGAAAATATGCCTAGTGAAGCTATACGATTGGCCAGGCATGGATATTTAAGTTATTTAAGTAGCAGGGTATCATATCTTGCTTCACAGACAAAGGAGGGTACCGACATTTTGAAGAAAGAACTCAGCAGATTGGAGCCGATACTTGGAGATGTTTTGAAGCAACAAAAAGATGTAGGTGATAGTCTAGATCCATGTAATAACATTGTAAGAGATCCTATCAGGGTAAGGAGCAAGGGCATGCAAGGAAGCAATGAACCAAAAACAAAGCCAAAATGTCGTTTATGCAGAAGCTATGGACACAATAAAACTACATGCCCACAGAAGAATAGGGTACGTGGCAGAGTTAGAGTTGTGGCAAAAAATAAACCCAAACTTCGACGGCTCAGTGATATTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

354

Amino Acids

40.33

Weight (kDa)

9.95

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 761
AccB1I GGYRCC 2 cut(s) 388, 761
AccII CGCG 1 cut(s) 379
AciI CCGC 1 cut(s) 379
AclWI GGATC 3 cut(s) 343, 845, 869
AcoI YGGCCR 1 cut(s) 693
AcsI RAATTY 2 cut(s) 93, 295
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 3 cut(s) 263, 763, 996
AfiI CCNNNNNNNGG 1 cut(s) 806
AgsI TTSAA 7 cut(s) 67, 176, 433, 476, 775, 820, 1058
AhdI GACNNNNNGTC 1 cut(s) 45
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 1 cut(s) 695
AluBI AGCT 5 cut(s) 227, 284, 408, 683, 954
AluI AGCT 5 cut(s) 227, 284, 408, 683, 954
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 137, 152
AlwI GGATC 3 cut(s) 343, 845, 869
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 410, 693
ApeKI GCWGC 2 cut(s) 227, 230
ApoI RAATTY 2 cut(s) 93, 295
Asp718I GGTACC 1 cut(s) 761
AspLEI GCGC 2 cut(s) 379, 582
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 3 cut(s) 437, 574, 851
BaeGI GKGCMC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 584, 617
BalI TGGCCA 1 cut(s) 695
BanI GGYRCC 2 cut(s) 388, 761
BauI CACGAG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 214, 217
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 1058
BciT130I CCWGG 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 137, 152
BfaI CTAG 4 cut(s) 234, 552, 675, 848
BfmI CTRYAG 1 cut(s) 353
BisI GCNGC 2 cut(s) 228, 231
BlsI GCNGC 2 cut(s) 229, 232
Bme1390I CCNGG 1 cut(s) 697
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 4 cut(s) 82, 390, 763, 798
BmrFI CCNGG 1 cut(s) 697
BsaAI YACGTR 1 cut(s) 998
BsaJI CCNNGG 1 cut(s) 660
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse3DI GCAATG 2 cut(s) 81, 919
BseBI CCWGG 1 cut(s) 697
BseDI CCNNGG 1 cut(s) 660
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMI GCAATG 2 cut(s) 81, 919
BseMII CTCAG 3 cut(s) 147, 799, 1060
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 2 cut(s) 214, 217
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 412, 695
BshNI GGYRCC 2 cut(s) 388, 761
BsiHKAI GWGCWC 1 cut(s) 218
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 2 cut(s) 137, 152
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 2 cut(s) 412, 695
Bsp1286I GDGCHC 2 cut(s) 218, 393
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 4 cut(s) 335, 490, 850, 874
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 412, 695
BspCNI CTCAG 3 cut(s) 148, 798, 1059
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 82, 390, 763, 798
BspPI GGATC 3 cut(s) 343, 845, 869
BspT107I GGYRCC 2 cut(s) 388, 761
BsrDI GCAATG 2 cut(s) 81, 919
BsrGI TGTACA 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 4 cut(s) 335, 490, 850, 874
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 660
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 697
Bst4CI ACNGT 4 cut(s) 208, 357, 425, 655
Bst6I CTCTTC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 998
BstC8I GCNNGC 3 cut(s) 410, 630, 902
BstDEI CTNAG 5 cut(s) 156, 384, 604, 785, 1046
BstEII GGTNACC 1 cut(s) 253
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 2 cut(s) 379, 582
BstKTI GATC 4 cut(s) 338, 493, 853, 877
BstMAI GTCTC 2 cut(s) 137, 152
BstMBI GATC 4 cut(s) 335, 490, 850, 874
BstNI CCWGG 1 cut(s) 697
BstNSI RCATGY 2 cut(s) 904, 978
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 695
BstSFI CTRYAG 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 214, 217
BstX2I RGATCY 2 cut(s) 850, 874
BstYI RGATCY 2 cut(s) 850, 874
BsuRI GGCC 2 cut(s) 412, 695
BtrI CACGTC 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 4 cut(s) 49, 204, 216, 1054
Cac8I GCNNGC 3 cut(s) 410, 630, 902
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 2 cut(s) 379, 582
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 3 cut(s) 262, 762, 995
CviAII CATG 8 cut(s) 57, 259, 575, 583, 701, 855, 901, 975
CviQI GTAC 3 cut(s) 262, 762, 995
DdeI CTNAG 5 cut(s) 156, 384, 604, 785, 1046
DpnI GATC 4 cut(s) 337, 492, 852, 876
DpnII GATC 4 cut(s) 335, 490, 850, 874
DraI TTTAAA 1 cut(s) 301
DriI GACNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 693
Eam1104I CTCTTC 1 cut(s) 540
Eam1105I GACNNNNNGTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 660
Eco57I CTGAAG 1 cut(s) 660
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 695
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 8 cut(s) 60, 262, 578, 586, 704, 858, 904, 978
FaqI GGGAC 1 cut(s) 548
FatI CATG 8 cut(s) 56, 258, 574, 582, 700, 854, 900, 974
Fnu4HI GCNGC 2 cut(s) 228, 231
Fsp4HI GCNGC 2 cut(s) 228, 231
FspBI CTAG 4 cut(s) 234, 552, 675, 848
GlaI GCGC 2 cut(s) 378, 581
GluI GCNGC 2 cut(s) 228, 231
HaeIII GGCC 2 cut(s) 412, 695
HhaI GCGC 2 cut(s) 379, 582
Hin1II CATG 8 cut(s) 60, 262, 578, 586, 704, 858, 904, 978
Hin6I GCGC 2 cut(s) 377, 580
HinP1I GCGC 2 cut(s) 377, 580
HincII GTYRAC 1 cut(s) 521
HindII GTYRAC 1 cut(s) 521
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 221
HphI GGTGA 3 cut(s) 437, 574, 851
Hpy166II GTNNAC 4 cut(s) 421, 521, 621, 646
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 3 cut(s) 211, 277, 848
Hpy8I GTNNAC 4 cut(s) 421, 521, 621, 646
Hpy99I CGWCG 2 cut(s) 419, 1044
HpyAV CCTTC 3 cut(s) 82, 427, 470
HpyCH4III ACNGT 4 cut(s) 208, 357, 425, 655
HpyCH4IV ACGT 3 cut(s) 417, 523, 997
HpyCH4V TGCA 3 cut(s) 497, 904, 948
HpyF3I CTNAG 5 cut(s) 156, 384, 604, 785, 1046
HpySE526I ACGT 3 cut(s) 417, 523, 997
Hsp92II CATG 8 cut(s) 60, 262, 578, 586, 704, 858, 904, 978
HspAI GCGC 2 cut(s) 377, 580
KpnI GGTACC 1 cut(s) 765
Kzo9I GATC 4 cut(s) 335, 490, 850, 874
LmnI GCTCC 2 cut(s) 796, 891
LpnPI CCDG 6 cut(s) 168, 394, 682, 709, 712, 868
Lsp1109I GCAGC 2 cut(s) 214, 217
MaeI CTAG 4 cut(s) 234, 552, 675, 848
MaeII ACGT 3 cut(s) 417, 523, 997
MaeIII GTNAC 6 cut(s) 47, 208, 253, 304, 425, 562
MalI GATC 4 cut(s) 337, 492, 852, 876
MboI GATC 4 cut(s) 335, 490, 850, 874
MboII GAAGA 5 cut(s) 188, 520, 557, 787, 997
MflI RGATCY 2 cut(s) 850, 874
MhlI GDGCHC 2 cut(s) 218, 393
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 4 cut(s) 35, 93, 295, 498
MluNI TGGCCA 1 cut(s) 695
MnlI CCTC 7 cut(s) 104, 133, 230, 475, 541, 579, 751
Mox20I TGGCCA 1 cut(s) 695
MscI TGGCCA 1 cut(s) 695
MseI TTAA 5 cut(s) 300, 456, 611, 710, 719
Msp20I TGGCCA 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 697
MvaI CCWGG 1 cut(s) 697
MvnI CGCG 1 cut(s) 379
NdeII GATC 4 cut(s) 335, 490, 850, 874
NlaIII CATG 8 cut(s) 60, 262, 578, 586, 704, 858, 904, 978
NlaIV GGNNCC 4 cut(s) 82, 390, 763, 798
NmuCI GTSAC 5 cut(s) 47, 208, 304, 425, 562
NspI RCATGY 2 cut(s) 904, 978
PaeI GCATGC 1 cut(s) 904
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 229, 232
Ppu21I YACGTR 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 695
PspEI GGTNACC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 695
PspN4I GGNNCC 4 cut(s) 82, 390, 763, 798
PspPI GGNCC 1 cut(s) 411
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 850, 874
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 263, 763, 996
RsaNI GTAC 3 cut(s) 262, 762, 995
SaqAI TTAA 5 cut(s) 300, 456, 611, 710, 719
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 4 cut(s) 335, 490, 850, 874
Sau96I GGNCC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 697
SduI GDGCHC 2 cut(s) 218, 393
SfcI CTRYAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 904
Sse9I AATT 4 cut(s) 35, 93, 295, 498
SsiI CCGC 1 cut(s) 379
SspMI CTAG 4 cut(s) 234, 552, 675, 848
StyD4I CCNGG 1 cut(s) 695
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 208, 357, 425, 655
TaiI ACGT 3 cut(s) 420, 526, 1000
TaqI TCGA 2 cut(s) 450, 1039
TasI AATT 4 cut(s) 35, 93, 295, 498
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 5 cut(s) 300, 456, 611, 710, 719
Tru9I TTAA 5 cut(s) 300, 456, 611, 710, 719
TscAI CASTG 4 cut(s) 56, 211, 223, 1054
TseFI GTSAC 5 cut(s) 47, 208, 304, 425, 562
TseI GCWGC 2 cut(s) 227, 230
Tsp45I GTSAC 5 cut(s) 47, 208, 304, 425, 562
TspDTI ATGAA 3 cut(s) 180, 558, 930
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 4 cut(s) 56, 211, 223, 1054
XapI RAATTY 2 cut(s) 93, 295
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 904, 978
XspI CTAG 4 cut(s) 234, 552, 675, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.