RchiOBHm_Chr5g0035911

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000290
Physical Location & Seq
Reverse (-)
29967555 .. 29968176
622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31475

Sequence Viewer

Length: 354 bp
ATGCCCTACAATCCGGGGGAACATTGGATTTTGACAATCATTTGGGAGGATGAAGTCTACATCTTAGACCCTTTGCCAAAACCGGTCCATTACACGGCATGGGAAACTGCAGTGATGAATGCGGTTAAAAGTTACAATGCTGAAAAGGGGAGGGCTAACAAAATGCCTAAATTAAGACTACTCCCGGGCGTACCTAAACAACCGGGTGGAATTGAGTGTGGCTACTATGTTATGCGGTACATGAAGGATATTATTAATGATGACACACTTTCCTTTTCGACCAAGGTATACGTATTAGGAATTAACAGAAACTTTGGTTTAAATATTAGCGCATTTCATTATGACTTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

117

Amino Acids

13.5

Weight (kDa)

6.9

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 2 - 94 8.3e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 288
AciI CCGC 2 cut(s) 122, 235
AfaI GTAC 2 cut(s) 192, 239
AfiI CCNNNNNNNGG 1 cut(s) 94
AgeI ACCGGT 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 184
AseI ATTAAT 1 cut(s) 255
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 4 cut(s) 15, 185, 186, 204
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 111
BcnI CCSGG 4 cut(s) 15, 185, 186, 204
BfmI CTRYAG 1 cut(s) 108
Bme1390I CCNGG 4 cut(s) 15, 185, 186, 204
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 4 cut(s) 15, 185, 186, 204
BpuMI CCSGG 4 cut(s) 15, 185, 186, 204
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 14, 184, 282
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 14, 184, 282
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 94
BshTI ACCGGT 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 4 cut(s) 14, 83, 185, 203
BslI CCNNNNNNNGG 1 cut(s) 94
BsmI GAATGC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 184
BspACI CCGC 2 cut(s) 122, 235
BspMAI CTGCAG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 14, 184, 282
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 289
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 332
BstSCI CCNGG 4 cut(s) 13, 183, 184, 202
BstSFI CTRYAG 1 cut(s) 108
BstSNI TACGTA 1 cut(s) 292
BstZ17I GTATAC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 85
Cfr9I CCCGGG 1 cut(s) 184
Csp6I GTAC 2 cut(s) 191, 238
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 99, 241
CviJI RGCY 2 cut(s) 155, 222
CviKI_1 RGCY 2 cut(s) 155, 222
CviQI GTAC 2 cut(s) 191, 238
DdeI CTNAG 1 cut(s) 64
DraI TTTAAA 1 cut(s) 321
Eco105I TACGTA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 102, 244
FaiI YATR 6 cut(s) 100, 228, 233, 242, 289, 342
FatI CATG 2 cut(s) 98, 240
FblI GTMKAC 2 cut(s) 57, 288
FokI GGATG 1 cut(s) 62
GlaI GCGC 1 cut(s) 331
HapII CCGG 4 cut(s) 14, 83, 185, 203
HhaI GCGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 102, 244
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HpaII CCGG 4 cut(s) 14, 83, 185, 203
Hpy166II GTNNAC 2 cut(s) 58, 289
Hpy8I GTNNAC 2 cut(s) 58, 289
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 102, 244
HspAI GCGC 1 cut(s) 330
LpnPI CCDG 4 cut(s) 27, 96, 198, 216
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 131
MluCI AATT 3 cut(s) 170, 210, 300
MnlI CCTC 2 cut(s) 40, 144
MseI TTAA 5 cut(s) 126, 173, 255, 303, 320
MspI CCGG 4 cut(s) 14, 83, 185, 203
MspR9I CCNGG 4 cut(s) 15, 185, 186, 204
Mva1269I GAATGC 1 cut(s) 124
NciI CCSGG 4 cut(s) 15, 185, 186, 204
NlaIII CATG 2 cut(s) 102, 244
PctI GAATGC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 255
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 2 cut(s) 192, 239
RsaNI GTAC 2 cut(s) 191, 238
SaqAI TTAA 5 cut(s) 126, 173, 255, 303, 320
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 15, 185, 186, 204
SetI ASST 3 cut(s) 196, 288, 294
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 85
SmaI CCCGGG 1 cut(s) 186
SnaBI TACGTA 1 cut(s) 292
Sse9I AATT 3 cut(s) 170, 210, 300
SsiI CCGC 2 cut(s) 122, 235
SspI AATATT 1 cut(s) 325
StyD4I CCNGG 4 cut(s) 13, 183, 184, 202
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 278
TasI AATT 3 cut(s) 170, 210, 300
Tru1I TTAA 5 cut(s) 126, 173, 255, 303, 320
Tru9I TTAA 5 cut(s) 126, 173, 255, 303, 320
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 4 cut(s) 66, 131, 257, 326
TspMI CCCGGG 1 cut(s) 184
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 85
VspI ATTAAT 1 cut(s) 255
XmaI CCCGGG 1 cut(s) 184
XmiI GTMKAC 2 cut(s) 57, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.