Rh3BG237800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000290
Physical Location & Seq
Reverse (-)
22284720 .. 22285118
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG237800.1

Sequence Viewer

Length: 399 bp
ATGTCCTCATCCTTTTGTAACAATTACATTGCCAATAAGGTTTTCTCTCTTTCTCTCTTAACAGGCTGGGACGCGGGGTTGCCGTCAACACATAGGAGAGATCGATCTGTGCTCCAACATCTTCAAAGCATACCAACTCTCGAGAGATCGATCTGCGCTCCAAGATCGCTCTGTCACCGCCTCTCTCTCTCTCTATCTGGGCTGCCGTCAACATATCTTCCAAGATCGATCTGTGCTCCAACATCTTCAAAGATCGATCTGTTCTTCAACATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATCTGTGCTCCAAGCTCTTCAAAGCGTACCAACTCTCGAGAGATCGATCTCAACAGCAAATTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

9.72

Isoelectric Point (pI)

82.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 74, 178
AfaI GTAC 2 cut(s) 312, 358
AgsI TTSAA 6 cut(s) 125, 249, 268, 277, 305, 351
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw21I GWGCWC 4 cut(s) 114, 238, 294, 340
Ama87I CYCGRG 2 cut(s) 140, 366
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 2 cut(s) 140, 366
Bbv12I GWGCWC 4 cut(s) 114, 238, 294, 340
BbvI GCAGC 1 cut(s) 189
BceAI ACGGC 2 cut(s) 67, 190
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmeT110I CYCGRG 2 cut(s) 140, 366
Bsa29I ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
Bse3DI GCAATG 1 cut(s) 27
BseCI ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 74
BshVI ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
BsiHKAI GWGCWC 4 cut(s) 114, 238, 294, 340
BsiHKCI CYCGRG 2 cut(s) 140, 366
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsoBI CYCGRG 2 cut(s) 140, 366
Bsp1286I GDGCHC 4 cut(s) 114, 238, 294, 340
BspACI CCGC 2 cut(s) 74, 178
BspDI ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
BspFNI CGCG 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 352
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 158
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 189
Bsu15I ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
BsuTUI ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
BtsCI GGATG 1 cut(s) 8
CfoI GCGC 1 cut(s) 158
ClaI ATCGAT 7 cut(s) 103, 149, 227, 255, 283, 329, 375
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 311, 357
CviJI RGCY 3 cut(s) 66, 202, 345
CviKI_1 RGCY 3 cut(s) 66, 202, 345
CviQI GTAC 2 cut(s) 311, 357
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco88I CYCGRG 2 cut(s) 140, 366
FaiI YATR 3 cut(s) 93, 131, 214
FaqI GGGAC 1 cut(s) 83
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 70
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 87, 210
HindII GTYRAC 2 cut(s) 87, 210
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 87, 210
Hpy188III TCNNGA 5 cut(s) 140, 142, 322, 366, 368
Hpy8I GTNNAC 2 cut(s) 87, 210
HspAI GCGC 1 cut(s) 156
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 5 cut(s) 117, 163, 241, 297, 343
LpnPI CCDG 3 cut(s) 48, 52, 183
Lsp1109I GCAGC 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 17, 173
MboII GAAGA 7 cut(s) 113, 209, 237, 256, 265, 293, 339
MhlI GDGCHC 4 cut(s) 114, 238, 294, 340
MluCI AATT 2 cut(s) 22, 389
MmeI TCCRAC 2 cut(s) 139, 263
MnlI CCTC 2 cut(s) 16, 191
MseI TTAA 1 cut(s) 59
MvnI CGCG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 173
PaeR7I CTCGAG 2 cut(s) 140, 366
PciSI GCTCTTC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 66
RsaI GTAC 2 cut(s) 312, 358
RsaNI GTAC 2 cut(s) 311, 357
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 203
SduI GDGCHC 4 cut(s) 114, 238, 294, 340
SetI ASST 2 cut(s) 42, 347
Sfr274I CTCGAG 2 cut(s) 140, 366
SlaI CTCGAG 2 cut(s) 140, 366
SmlI CTYRAG 2 cut(s) 140, 366
SmoI CTYRAG 2 cut(s) 140, 366
Sse9I AATT 2 cut(s) 22, 389
SsiI CCGC 2 cut(s) 74, 178
TasI AATT 2 cut(s) 22, 389
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 173
XhoI CTCGAG 2 cut(s) 140, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.