Rmu_sc0010704.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010704.1
OG0000290
Physical Location & Seq
Reverse (-)
2 .. 587
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010704.1_g000001.1.cds

Sequence Viewer

Length: 476 bp
atgcttcttgctcagcaaagaaagacggaagacatattaaatcagaggattgcacaactagaagcactaataacagggaagacagctatgcctcctcctgccacaggggagaatgtcatttcccctatatcagataaagggagttggcatgatagaccaagaattggcaaatttgatcctattgatggcaaagtcatagaaaatgtggtggaggaggactgcaacattatacctgctcctggaaagggtaccggatcatgtgagctagcagtggataacattaataatattgtggctttcggtaccgtattcgaagagggggatataagcaagacattgcatggagttccactgaaggagggaactgttcatgtatcagttgatggtatacttaagtcagatgcagtgcttcctttccctatcaagggtgagatggaattcgttagggatgctattgggagtcacgtagcttggcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

159

Amino Acids

17.1

Weight (kDa)

4.93

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
Acc65I GGTACC 2 cut(s) 248, 302
AccB1I GGYRCC 2 cut(s) 248, 302
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 388
AclWI GGATC 2 cut(s) 170, 262
AcsI RAATTY 2 cut(s) 170, 437
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 2 cut(s) 250, 304
AfiI CCNNNNNNNGG 7 cut(s) 104, 164, 185, 239, 245, 424, 425
AflII CTTAAG 1 cut(s) 392
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 3 cut(s) 86, 265, 470
AluI AGCT 3 cut(s) 86, 265, 470
AlwI GGATC 2 cut(s) 170, 262
ApoI RAATTY 2 cut(s) 170, 437
AseI ATTAAT 1 cut(s) 282
Asp718I GGTACC 2 cut(s) 248, 302
AsuHPI GGTGA 1 cut(s) 440
AsuII TTCGAA 1 cut(s) 312
AsuNHI GCTAGC 1 cut(s) 265
BanI GGYRCC 2 cut(s) 248, 302
BbsI GAAGAC 2 cut(s) 36, 86
BccI CCATC 3 cut(s) 179, 377, 427
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 59, 266
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 250, 304
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 391, 439
BmtI GCTAGC 1 cut(s) 269
BpiI GAAGAC 2 cut(s) 36, 86
Bpu1102I GCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 7 cut(s) 104, 164, 185, 239, 245, 424, 425
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 7 cut(s) 104, 164, 185, 239, 245, 424, 425
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 84, 227
BshFI GGCC 1 cut(s) 475
BshNI GGYRCC 2 cut(s) 248, 302
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 7 cut(s) 104, 164, 185, 239, 245, 424, 425
BsnI GGCC 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 175, 254
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 250, 304
BspMI ACCTGC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 269
BspPI GGATC 2 cut(s) 170, 262
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 2 cut(s) 248, 302
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 335
BssMI GATC 2 cut(s) 175, 254
BssNAI GTATAC 1 cut(s) 389
Bst1107I GTATAC 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 307, 367
Bst6I CTCTTC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 2 cut(s) 178, 257
BstMBI GATC 2 cut(s) 175, 254
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 36, 86
BstZ17I GTATAC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 2 cut(s) 276, 411
BtsIMutI CAGTG 3 cut(s) 276, 350, 411
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 249, 303
CviAII CATG 4 cut(s) 149, 258, 341, 371
CviJI RGCY 5 cut(s) 86, 265, 296, 470, 475
CviKI_1 RGCY 5 cut(s) 86, 265, 296, 470, 475
CviQI GTAC 2 cut(s) 249, 303
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 177, 256
DpnII GATC 2 cut(s) 175, 254
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 152, 261, 344, 374
FatI CATG 4 cut(s) 148, 257, 340, 370
FblI GTMKAC 1 cut(s) 388
FokI GGATG 1 cut(s) 461
FspBI CTAG 2 cut(s) 59, 266
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 252
Hin1II CATG 4 cut(s) 152, 261, 344, 374
HinfI GANTC 1 cut(s) 460
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 45, 133, 400
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 307, 367
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 4 cut(s) 53, 222, 340, 404
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 4 cut(s) 152, 261, 344, 374
KpnI GGTACC 2 cut(s) 252, 306
Kzo9I GATC 2 cut(s) 175, 254
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 7 cut(s) 60, 90, 111, 225, 246, 252, 265
LweI GCATC 2 cut(s) 391, 439
MaeI CTAG 2 cut(s) 59, 266
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 177, 256
MboI GATC 2 cut(s) 175, 254
MboII GAAGA 3 cut(s) 41, 91, 326
MluCI AATT 3 cut(s) 162, 170, 437
MlyI GAGTC 1 cut(s) 469
MnlI CCTC 7 cut(s) 39, 102, 105, 205, 208, 310, 352
MseI TTAA 3 cut(s) 38, 282, 393
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
NdeII GATC 2 cut(s) 175, 254
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 4 cut(s) 152, 261, 344, 374
NlaIV GGNNCC 2 cut(s) 250, 304
NmuCI GTSAC 1 cut(s) 461
NspV TTCGAA 1 cut(s) 312
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 238
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
Ppu21I YACGTR 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 250, 304
RsaI GTAC 2 cut(s) 250, 304
RsaNI GTAC 2 cut(s) 249, 303
SaqAI TTAA 3 cut(s) 38, 282, 393
Sau3AI GATC 2 cut(s) 175, 254
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 240
SetI ASST 5 cut(s) 88, 235, 267, 468, 472
SfaNI GCATC 2 cut(s) 391, 439
SfuI TTCGAA 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 3 cut(s) 162, 170, 437
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 59, 266
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 307, 367
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 162, 170, 437
Tru1I TTAA 3 cut(s) 38, 282, 393
Tru9I TTAA 3 cut(s) 38, 282, 393
TscAI CASTG 3 cut(s) 276, 357, 411
TseFI GTSAC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 3 cut(s) 276, 357, 411
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 392
VspI ATTAAT 1 cut(s) 282
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 2 cut(s) 170, 437
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 2 cut(s) 59, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.