Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000290

Physical Location & Seq

Genomic Coordinates Forward (+)

66289554 .. 66309059

Gene Structure 19506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG493900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTTTCCAAGAAGAGAAAGGTTAATAGTGAGAAAAAATCAAAGAATGATGCTGATCGAACCACTAGTGAACCTGATATTAATGAGGTGCATGATGGGAAAGGAGAATCTGCATCAGCTGACACAATTACAAGCACTGAATCAAGTAAAATAAGAGGGAAGCGAAGTGTTGTGCAAATGTATAAGAAACTTCATCATGAACAAAGTCAGCGAGTGAAGAAGAGAAAATATCATCACAAATTATCAAGAAAGGGTTATATTGGACTAGAGGAGGAATTAAGAGAGACTTGGCCTGAAGGAGAGGTAATTGATCGTGCAGTGTTATGGAAGAAAGCTCGTGTACCTAAAAATGGGAAGATAGATGAGGAGGTGACACCAATAGCATCAAAAATTCATCTTTTAAATTTAAGAGACCGATCTGATCTTACTAGTGAAGACAGAGATAGGTTGATTGAAGATCTGGTGCGAGAGATAACTTATATATGGCAGACAGATGAGCTTAGAAGCCATAAACCCACACCAGTTGATGAAGCTAGGAGGATGGATCGCCGTCAATGTGGATGGACTCGAGGTCAGGGACGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

195

Amino Acids

22.77

Weight (kDa)

9.65

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	132 - 179	1.5e-08	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000290)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata	RLG00000013212
rosa_multiflora	Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii	Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa	Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha	Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana	Rw2G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	390, 403
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	455
AhdI	GACNNNNNGTC	1 cut(s)	570
AhlI	ACTAGT	2 cut(s)	65, 428
AluBI	AGCT	5 cut(s)	119, 335, 499, 533, 584
AluI	AGCT	5 cut(s)	119, 335, 499, 533, 584
Alw26I	GTCTC	2 cut(s)	278, 405
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	390, 403
AseI	ATTAAT	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	567
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	441
BccI	CCATC	3 cut(s)	89, 535, 555
BceAI	ACGGC	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	278, 405
BcuI	ACTAGT	2 cut(s)	65, 428
BfaI	CTAG	4 cut(s)	66, 266, 429, 534
BglII	AGATCT	1 cut(s)	457
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	40, 122, 392
BpiI	GAAGAC	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	54
BseGI	GGATG	2 cut(s)	546, 566
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	284, 380
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	278, 405
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	567
Bsp143I	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
BspANI	GGCC	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	521
BssMI	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	8, 215
BstDEI	CTNAG	2 cut(s)	500, 585
BstF5I	GGATG	2 cut(s)	546, 566
BstKTI	GATC	6 cut(s)	58, 313, 419, 424, 460, 547
BstMAI	GTCTC	2 cut(s)	278, 405
BstMBI	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	546, 566
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	135, 324
CciI	TCATGA	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	2 cut(s)	92, 197
CviJI	RGCY	7 cut(s)	119, 292, 335, 499, 507, 533, 584
CviKI_1	RGCY	7 cut(s)	119, 292, 335, 499, 507, 533, 584
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	500, 585
DpnI	GATC	6 cut(s)	57, 312, 418, 423, 459, 546
DpnII	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
DraI	TTTAAA	1 cut(s)	402
DriI	GACNNNNNGTC	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	8, 215
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	2 cut(s)	8, 215
Eco31I	GGTCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	567
FaeI	CATG	2 cut(s)	95, 200
FaiI	YATR	9 cut(s)	93, 183, 198, 258, 325, 480, 482, 484, 510
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	2 cut(s)	91, 196
FokI	GGATG	2 cut(s)	553, 573
FspBI	CTAG	4 cut(s)	66, 266, 429, 534
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	95, 200
HinfI	GANTC	3 cut(s)	107, 140, 565
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	71, 341
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	197, 246
Hpy8I	GTNNAC	2 cut(s)	71, 341
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	91, 113, 175, 317
HpyF3I	CTNAG	2 cut(s)	500, 585
Hsp92II	CATG	2 cut(s)	95, 200
Kzo9I	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
LpnPI	CCDG	5 cut(s)	87, 306, 446, 534, 560
LweI	GCATC	3 cut(s)	40, 122, 392
MaeI	CTAG	4 cut(s)	66, 266, 429, 534
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	6 cut(s)	57, 312, 418, 423, 459, 546
MboI	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
MboII	GAAGA	7 cut(s)	25, 229, 232, 340, 367, 446, 467
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	6 cut(s)	126, 239, 275, 306, 390, 403
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	79, 149, 262, 265, 295, 358, 361, 531, 563
MseI	TTAA	5 cut(s)	24, 81, 278, 401, 407
MspA1I	CMGCKG	1 cut(s)	119
NdeII	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
NlaIII	CATG	2 cut(s)	95, 200
NmuCI	GTSAC	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	567
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	107, 140
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PshBI	ATTAAT	1 cut(s)	81
PspXI	VCTCGAGB	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	5 cut(s)	24, 81, 278, 401, 407
Sau3AI	GATC	6 cut(s)	55, 310, 416, 421, 457, 544
SchI	GAGTC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	40, 122, 392
Sfr274I	CTCGAG	1 cut(s)	567
SlaI	CTCGAG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SpeI	ACTAGT	2 cut(s)	65, 428
Sse9I	AATT	6 cut(s)	126, 239, 275, 306, 390, 403
SspMI	CTAG	4 cut(s)	66, 266, 429, 534
TaqI	TCGA	2 cut(s)	58, 568
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	6 cut(s)	126, 239, 275, 306, 390, 403
TfiI	GAWTC	2 cut(s)	107, 140
Tru1I	TTAA	5 cut(s)	24, 81, 278, 401, 407
Tru9I	TTAA	5 cut(s)	24, 81, 278, 401, 407
TscAI	CASTG	2 cut(s)	142, 324
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	182, 213, 383, 543
TspRI	CASTG	2 cut(s)	142, 324
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	2 cut(s)	390, 403
XhoI	CTCGAG	1 cut(s)	567
XspI	CTAG	4 cut(s)	66, 266, 429, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.