RchiOBHm_Chr4g0424111

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000290
Physical Location & Seq
Forward (+)
49698317 .. 49699212
896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39342

Sequence Viewer

Length: 504 bp
ATGGAAGAGACTAATGAGTCAATAAGCACAGTGTTAGATGATAAAGTCTTTGGCGTGCAAAAAGAACTCTACATCTTAACTGAGAATGTGACTAATCTCGTAGAAATGAAGTGGATTGGTCAAGGAGTGATAGCAACATACATGGCGCACCTACATGAAATTATTAGTCAAAGGGATGAGTTGGATACATTCGCTTTTATTGATCCAGCAGCCACATATAAATGTGAAAGACCAGGATTTCATCCCTACTTGGTGGACCGGTTGAAAGAGGGGAAGGCTGACCGTATATTTTGTATGCCATATAATCCGGGGGAACATTGGATATTGACAATTATTTGGGAGGATGAAATCTACATTTTGGACCCTTTGCCTAAACCAGTCAATTACCAATCATGGGAGAACATAGTGATAAATGCGGTTAAAGCTTTCAATGCTGAAACGGGTAGGGTTAACAAAGTGCCCAAGGTGAAATTACTTCCGGTAAGTAATGATATGTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

167

Amino Acids

19.2

Weight (kDa)

4.89

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AciI CCGC 1 cut(s) 416
AclWI GGATC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 394
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 265, 430
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 209
AsiGI ACCGGT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 256, 361
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 2 cut(s) 256, 361
BaeGI GKGCMC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 2
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 234, 309
Bme18I GGWCC 2 cut(s) 256, 361
BmgT120I GGNCC 2 cut(s) 256, 361
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 2 cut(s) 234, 309
BpuMI CCSGG 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 308, 462
BsaWI WCCGGW 2 cut(s) 258, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 308, 462
BseGI GGATG 3 cut(s) 181, 241, 349
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 258
BsiSI CCGG 3 cut(s) 259, 308, 479
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 308, 462
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 31, 284
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 3 cut(s) 181, 241, 349
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 422, 431
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 232, 307
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 221
BsuI GTATCC 1 cut(s) 178
BtsCI GGATG 3 cut(s) 181, 241, 349
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 256, 361
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 3 cut(s) 142, 155, 393
CviJI RGCY 3 cut(s) 212, 278, 425
CviKI_1 RGCY 3 cut(s) 212, 278, 425
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 256, 361
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 3 cut(s) 145, 158, 396
FatI CATG 3 cut(s) 141, 154, 392
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 188, 228, 356
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 210
HapII CCGG 3 cut(s) 259, 308, 479
HhaI GCGC 1 cut(s) 148
Hin1II CATG 3 cut(s) 145, 158, 396
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 1 cut(s) 17
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 3 cut(s) 259, 308, 479
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 256, 451
Hpy8I GTNNAC 2 cut(s) 256, 451
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 31, 284
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 431
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 3 cut(s) 145, 158, 396
HspAI GCGC 1 cut(s) 146
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 219, 219, 246, 272, 321, 390, 492
Lsp1109I GCAGC 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 4 cut(s) 159, 330, 382, 470
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 2 cut(s) 262, 334
MseI TTAA 3 cut(s) 77, 420, 450
MslI CAYNNNNRTG 2 cut(s) 153, 220
MspI CCGG 3 cut(s) 259, 308, 479
MspR9I CCNGG 2 cut(s) 234, 309
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 422, 431
NciI CCSGG 1 cut(s) 309
NdeII GATC 1 cut(s) 202
NlaIII CATG 3 cut(s) 145, 158, 396
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 88
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 2 cut(s) 256, 361
RseI CAYNNNNRTG 2 cut(s) 153, 220
SaqAI TTAA 3 cut(s) 77, 420, 450
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 256, 361
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 234, 309
SduI GDGCHC 1 cut(s) 462
SetI ASST 3 cut(s) 153, 427, 468
SinI GGWCC 2 cut(s) 256, 361
SmiMI CAYNNNNRTG 2 cut(s) 153, 220
Sse9I AATT 4 cut(s) 159, 330, 382, 470
SsiI CCGC 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 232, 307
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 31, 284
TasI AATT 4 cut(s) 159, 330, 382, 470
Tru1I TTAA 3 cut(s) 77, 420, 450
Tru9I TTAA 3 cut(s) 77, 420, 450
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 122, 171, 230, 360
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 256, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.