RchiOBHm_Chr2g0160871

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000290
Physical Location & Seq
Forward (+)
76787741 .. 76788122
382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52927

Sequence Viewer

Length: 213 bp
ATGCCCTACAATCCGGGGGAACATTGGATTTTGACAATCATTTGGGAGGATGAAGTCTACATCTTAGACCCTTTGCCAAAACCGGTCCATTACACGGCATGGGAAACTGCAGTGATGAATGCGGTTAAAAGTTACAATGCTGAAAAGGGGAGGGCTAACAAAGTGCCTAAATTAAGACTACTCCCGGTAAGCATTGTATATGTGGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

70

Amino Acids

8.09

Weight (kDa)

6.05

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AciI CCGC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 94
AgeI ACCGGT 1 cut(s) 82
AsiGI ACCGGT 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 15, 185
AvaII GGWCC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 111
BcnI CCSGG 2 cut(s) 15, 185
BfmI CTRYAG 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 15, 185
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 15, 185
BpuMI CCSGG 2 cut(s) 15, 185
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 94
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 3 cut(s) 14, 83, 185
BslI CCNNNNNNNGG 1 cut(s) 94
BsmI GAATGC 1 cut(s) 124
BspACI CCGC 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 13, 183
BstSFI CTRYAG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 1 cut(s) 99
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
DdeI CTNAG 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 85
FaeI CATG 1 cut(s) 102
FaiI YATR 3 cut(s) 100, 199, 201
FatI CATG 1 cut(s) 98
FblI GTMKAC 1 cut(s) 57
FokI GGATG 1 cut(s) 62
HapII CCGG 3 cut(s) 14, 83, 185
Hin1II CATG 1 cut(s) 102
HpaII CCGG 3 cut(s) 14, 83, 185
Hpy166II GTNNAC 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 1 cut(s) 102
LpnPI CCDG 3 cut(s) 27, 96, 198
MaeIII GTNAC 1 cut(s) 131
MluCI AATT 1 cut(s) 170
MnlI CCTC 2 cut(s) 40, 144
MseI TTAA 2 cut(s) 126, 173
MspI CCGG 3 cut(s) 14, 83, 185
MspR9I CCNGG 2 cut(s) 15, 185
Mva1269I GAATGC 1 cut(s) 124
NciI CCSGG 2 cut(s) 15, 185
NlaIII CATG 1 cut(s) 102
PctI GAATGC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 82
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 126, 173
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 15, 185
SfcI CTRYAG 1 cut(s) 108
SgeI CNNG 7 cut(s) 26, 27, 95, 106, 111, 196, 197
SinI GGWCC 1 cut(s) 85
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 13, 183
TasI AATT 1 cut(s) 170
Tru1I TTAA 2 cut(s) 126, 173
Tru9I TTAA 2 cut(s) 126, 173
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 66, 131
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.