RchiOBHm_Chr7g0227321

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000290
Physical Location & Seq
Reverse (-)
50593372 .. 50599343
5972 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20360

Sequence Viewer

Length: 2175 bp
ATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTGACATACACCGACACAGGAAATCTAAATGGATCAATAAGGCACACTCTACAGTCTTATATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCAACGTGGACGGTGACTTGAAGAATAAACTTTGGCTCGATGTTAAGGATACATTCAAGGTCGCCCCTGAAAGTAAGAAACTGGTATTGACATCTGCTGGCACTAAATGGAGAGCATTCAAGACCATGTTAACAAGAAAATATGTGCTCCCATACTTGGGAAAGAAGAAGAAGTTGAGAAAGCCACCAAGTCAATATGCATTTGTTGGGAGGCAGCCATGGAGGCAATTTGTGAAAGAGAGGACTACCGAGAAATGGCTAGAACTACATAATAAACAAAGTGAAAGAGTTCGGAAGAGAAAATATCATCATCGATTATCAAGAAAAGGATATATTGGACTAGAAGAGGAGCTGAAAAAGACTTTGCCTGAAGGAGAGGTAATAGATTGTGCAATTATGTGGAAGAAAGCCCGTCAACGTAAAGATGGGGACAGAGATGAAAAGGCTAGAGCTGTGGTGACAAAGATAGATGATTTGTTGGAGAAGAAAAGTAAGGGTGAGCTTGAGATTTCAGGGAGTAGTGATGTTCTTTCTCAAGCATTAGAAACTCTTGAACACTCGGGTAGGGTGAGGGGTGTTGGAGGCTTCATCAATCCCTCCACATACTTTAAACTTCCGAAGCTGAAAAGGATTAGAATTACCAAGGCAGACTTACTAGCACGTGATAGAGAGCGTGATAGAGAGTTGGAGGAGACAAAGAAAATGCTCACTGCACAGCAAGCAAAGGCAGAAGAGCTCTTAAATAAAAGGATTGCTGCATTAGAAGTAATGATAACAGGGAAGACACCCAACACTCCACCTTTGAATGTCCATGTTCTGGGAGACTGTAGAATTTCCCCTATATCGGATAAAGGAAGTATCCATGATAGAACACTAAATACCTCAAATAATCTTGATGAAGCCAAGGTGAAAGAAGAGGTTCAGGACTGCGAGGTTGTTCCTCCCCCTACTGAAATGGGTGGCACATGTGAGTTAGCAGTGGATACCATCAACAACATAGTTGCTTTTGGTACCGTATTTGAGGATGAGGATGTTAATAGGATGATACATGGAGTTCCGTTGAAGGAGGGGTGTGTTAGGGTGTCAGTGGATGGGGCCATTCAAGCTGAAGCACGACTTCCTTTCCTAGTGGAGGGTGAGATGGGATTGGTTGGCCAAGCTATTGGAAGTCATGTGGCTTGGCCTGAGGAGCTTGTTATTCGAAGAGTGAATAAGAAAAAGAAAAGGAAGATGGATTTTGTCAAACAATTGTTTGATCAAGCTGAGCTAAACTCATTTGTACCGAAGCGTTGCAAATTATTGTATAAACATGCCAAAACTATTATGAGCCAAACTAGTGAGTTGATAAGCACGGTGTTGGACGATAAAGTCTTCGGGTTACACAAAGAGCTCTTCATATTGACTGAGAATGTCACTGATCTTTTAGAAATGAAGAAGATTGGCCAAGGAGTGATAGCAGCATACATGGCGCACCTACATGAAACTCTTACTGAGAGAGATGAGTTGGACACCTTTACATTCATTGATCCTGCAGCCACATATAATTGTGAGAGATCGGGATTTGGTCCTTACTTAGTGGATCGGTTGAAAGAGGGAAAGGCTGATCGTATATTCTTTATGCCCTACAATCCGGGTTGCATCATGTGGGCTATGAAATACTATAAGGAACATTGGATTTTGACAATCATTTGGGAGGATGAAGTCTACATCTTAGACCCTTTGCCAAACCCGGTCCATTACACGGCATGGGAAACTGCAGTGATGAATGCGGTTAAAAGTTACAATGCTGAAAAGGGGAGGGCTAACAAAGTGCCTAAATTAAGATTACTCCCGGGCGTACCTAAACAACCGGGCGGAATTGAGTGTGGCTACTATGTTATGCGGTACATGAAGGATATTATTAATGATGACACACTTTCCTTTTCGACCAAGTGGGCGGTAAAGACTCGGAAAGGATATACCCAACAACAACTTGACGAGGTGCGCATGGAGGTGGCCAACTATTTGCAGACCTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

724

Amino Acids

82.86

Weight (kDa)

9.36

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 125 - 249 1.9e-10 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 372 - 451 8.3e-13 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1520
Acc16I TGCGCA 1 cut(s) 2138
Acc65I GGTACC 1 cut(s) 1163
AccB1I GGYRCC 2 cut(s) 130, 1163
AccB7I CCANNNNNTGG 1 cut(s) 970
AccI GTMKAC 1 cut(s) 1857
AccII CGCG 1 cut(s) 121
AciI CCGC 5 cut(s) 121, 1922, 2007, 2035, 2090
AclWI GGATC 3 cut(s) 85, 1673, 1740
AcoI YGGCCR 3 cut(s) 1306, 1594, 2148
AcsI RAATTY 1 cut(s) 984
AcuI CTGAAG 2 cut(s) 543, 1281
AcvI CACGTG 1 cut(s) 815
AfaI GTAC 5 cut(s) 5, 1165, 1434, 1992, 2039
AfiI CCNNNNNNNGG 7 cut(s) 310, 311, 408, 970, 997, 1285, 1894
AflIII ACRYGT 1 cut(s) 1118
AgsI TTSAA 8 cut(s) 175, 211, 274, 707, 958, 1216, 1256, 1741
AhlI ACTAGT 1 cut(s) 1487
Alw21I GWGCWC 3 cut(s) 303, 891, 1545
Alw26I GTCTC 2 cut(s) 839, 969
AlwI GGATC 3 cut(s) 85, 1673, 1740
Ama87I CYCGRG 2 cut(s) 712, 1984
AoxI GGCC 6 cut(s) 152, 1248, 1306, 1334, 1594, 2148
ApeKI GCWGC 4 cut(s) 367, 908, 1610, 1685
ApoI RAATTY 1 cut(s) 984
AseI ATTAAT 1 cut(s) 2055
Asp700I GAANNNNTTC 2 cut(s) 441, 1071
Asp718I GGTACC 1 cut(s) 1163
AspLEI GCGC 3 cut(s) 121, 1624, 2139
AspS9I GGNCC 4 cut(s) 153, 1248, 1718, 1885
AsuC2I CCSGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
AsuHPI GGTGA 6 cut(s) 179, 622, 662, 733, 1072, 1301
AsuII TTCGAA 1 cut(s) 1354
AvaI CYCGRG 2 cut(s) 712, 1984
AvaII GGWCC 2 cut(s) 1718, 1885
AxyI CCTNAGG 1 cut(s) 1338
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 3 cut(s) 1308, 1596, 2150
BanI GGYRCC 2 cut(s) 130, 1163
BanII GRGCYC 2 cut(s) 891, 1545
BbrPI CACGTG 1 cut(s) 815
BbsI GAAGAC 2 cut(s) 941, 1516
Bbv12I GWGCWC 3 cut(s) 303, 891, 1545
BbvI GCAGC 4 cut(s) 379, 895, 1622, 1697
BccI CCATC 6 cut(s) 143, 572, 1148, 1238, 1288, 1378
BceAI ACGGC 1 cut(s) 1911
BciVI GTATCC 3 cut(s) 196, 1022, 1129
BclI TGATCA 1 cut(s) 1408
BcnI CCSGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
BcoDI GTCTC 2 cut(s) 839, 969
BcuI ACTAGT 1 cut(s) 1487
BfaI CTAG 6 cut(s) 413, 494, 600, 809, 1280, 1488
BfmI CTRYAG 4 cut(s) 95, 979, 1683, 1908
BfuI GTATCC 3 cut(s) 196, 1022, 1129
BglI GCCNNNNNGGC 1 cut(s) 376
BisI GCNGC 4 cut(s) 368, 909, 1611, 1686
BlpI GCTNAGC 1 cut(s) 1416
BlsI GCNGC 4 cut(s) 369, 910, 1612, 1687
Bme1390I CCNGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
Bme18I GGWCC 2 cut(s) 1718, 1885
BmeT110I CYCGRG 2 cut(s) 712, 1984
BmgT120I GGNCC 4 cut(s) 153, 1248, 1718, 1885
BmiI GGNNCC 3 cut(s) 132, 1165, 1249
BmrFI CCNGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
BmsI GCATC 1 cut(s) 1800
BpiI GAAGAC 2 cut(s) 941, 1516
BplI GAGNNNNNCTC 2 cut(s) 1409, 1441
Bpu1102I GCTNAGC 1 cut(s) 1416
Bpu14I TTCGAA 1 cut(s) 1354
BpuEI CTTGAG 2 cut(s) 672, 677
BpuMI CCSGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
Bsa29I ATCGAT 1 cut(s) 466
BsaAI YACGTR 1 cut(s) 815
BsaJI CCNNGG 5 cut(s) 371, 795, 1056, 1597, 1984
Bsc4I CCNNNNNNNGG 7 cut(s) 310, 311, 408, 970, 997, 1285, 1894
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 1338
BseCI ATCGAT 1 cut(s) 466
BseDI CCNNGG 5 cut(s) 371, 795, 1056, 1597, 1984
BseGI GGATG 5 cut(s) 1183, 1189, 1200, 1249, 1855
BseLI CCNNNNNNNGG 7 cut(s) 310, 311, 408, 970, 997, 1285, 1894
BseMII CTCAG 4 cut(s) 1329, 1407, 1548, 1635
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 3 cut(s) 515, 857, 1355
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 4 cut(s) 379, 895, 1622, 1697
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 6 cut(s) 154, 1250, 1308, 1336, 1596, 2150
BshNI GGYRCC 2 cut(s) 130, 1163
BshVI ATCGAT 1 cut(s) 466
BsiHKAI GWGCWC 3 cut(s) 303, 891, 1545
BsiHKCI CYCGRG 2 cut(s) 712, 1984
BsiSI CCGG 4 cut(s) 1784, 1883, 1985, 2003
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 7 cut(s) 310, 311, 408, 970, 997, 1285, 1894
BsmAI GTCTC 2 cut(s) 839, 969
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 2 cut(s) 269, 1924
BsnI GGCC 6 cut(s) 154, 1250, 1308, 1336, 1596, 2150
BsoBI CYCGRG 2 cut(s) 712, 1984
Bsp119I TTCGAA 1 cut(s) 1354
Bsp1286I GDGCHC 4 cut(s) 135, 303, 891, 1545
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
Bsp1720I GCTNAGC 1 cut(s) 1416
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 5 cut(s) 121, 1922, 2007, 2035, 2090
BspANI GGCC 6 cut(s) 154, 1250, 1308, 1336, 1596, 2150
BspCNI CTCAG 4 cut(s) 1330, 1408, 1549, 1636
BspDI ATCGAT 1 cut(s) 466
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 132, 1165, 1249
BspMAI CTGCAG 2 cut(s) 1687, 1912
BspPI GGATC 3 cut(s) 85, 1673, 1740
BspQI GCTCTTC 2 cut(s) 879, 1550
BspT104I TTCGAA 1 cut(s) 1354
BspT107I GGYRCC 2 cut(s) 130, 1163
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 5 cut(s) 371, 795, 1056, 1597, 1984
BssMI GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
BssT1I CCWWGG 4 cut(s) 371, 795, 1056, 1597
Bst4CI ACNGT 5 cut(s) 99, 167, 980, 1168, 1507
Bst6I CTCTTC 6 cut(s) 443, 492, 879, 1062, 1351, 1550
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 815
BstBI TTCGAA 1 cut(s) 1354
BstC8I GCNNGC 3 cut(s) 152, 253, 873
BstDEI CTNAG 7 cut(s) 126, 1338, 1416, 1557, 1644, 1726, 1864
BstDSI CCRYGG 1 cut(s) 371
BstENI CCTNNNNNAGG 1 cut(s) 1283
BstF5I GGATG 5 cut(s) 1183, 1189, 1200, 1249, 1855
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 3 cut(s) 121, 1624, 2139
BstKTI GATC 7 cut(s) 80, 1411, 1573, 1681, 1709, 1735, 1759
BstMAI GTCTC 2 cut(s) 839, 969
BstMBI GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
BstMWI GCNNNNNNNGC 5 cut(s) 376, 872, 1256, 1342, 1619
BstNSI RCATGY 2 cut(s) 1122, 1466
BstSCI CCNGG 5 cut(s) 1783, 1881, 1983, 1984, 2002
BstSFI CTRYAG 4 cut(s) 95, 979, 1683, 1908
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 379, 895, 1622, 1697
BstV2I GAAGAC 2 cut(s) 941, 1516
BstXI CCANNNNNNTGG 1 cut(s) 1316
Bsu15I ATCGAT 1 cut(s) 466
Bsu36I CCTNAGG 1 cut(s) 1338
BsuI GTATCC 3 cut(s) 196, 1022, 1129
BsuRI GGCC 6 cut(s) 154, 1250, 1308, 1336, 1596, 2150
BsuTUI ATCGAT 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 5 cut(s) 1183, 1189, 1200, 1249, 1855
BtsI GCAGTG 3 cut(s) 861, 1137, 1917
BtsIMutI CAGTG 5 cut(s) 861, 1137, 1245, 1566, 1917
Cac8I GCNNGC 3 cut(s) 152, 253, 873
CfoI GCGC 3 cut(s) 121, 1624, 2139
Cfr13I GGNCC 4 cut(s) 153, 1248, 1718, 1885
Cfr9I CCCGGG 1 cut(s) 1984
ClaI ATCGAT 1 cut(s) 466
Csp6I GTAC 5 cut(s) 4, 1164, 1433, 1991, 2038
CviQI GTAC 5 cut(s) 4, 1164, 1433, 1991, 2038
DdeI CTNAG 7 cut(s) 126, 1338, 1416, 1557, 1644, 1726, 1864
DpnI GATC 7 cut(s) 79, 1410, 1572, 1680, 1708, 1734, 1758
DpnII GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
DraI TTTAAA 2 cut(s) 43, 763
DrdI GACNNNNNNGTC 1 cut(s) 1520
DseDI GACNNNNNNGTC 1 cut(s) 1520
EaeI YGGCCR 3 cut(s) 1306, 1594, 2148
Eam1104I CTCTTC 6 cut(s) 443, 492, 879, 1062, 1351, 1550
EarI CTCTTC 6 cut(s) 443, 492, 879, 1062, 1351, 1550
EciI GGCGGA 1 cut(s) 2022
Ecl136II GAGCTC 2 cut(s) 889, 1543
Eco130I CCWWGG 4 cut(s) 371, 795, 1056, 1597
Eco24I GRGCYC 2 cut(s) 891, 1545
Eco47I GGWCC 2 cut(s) 1718, 1885
Eco53kI GAGCTC 2 cut(s) 889, 1543
Eco57I CTGAAG 2 cut(s) 543, 1281
Eco72I CACGTG 1 cut(s) 815
Eco81I CCTNAGG 1 cut(s) 1338
Eco88I CYCGRG 2 cut(s) 712, 1984
EcoICRI GAGCTC 2 cut(s) 889, 1543
EcoNI CCTNNNNNAGG 1 cut(s) 1283
EcoT14I CCWWGG 4 cut(s) 371, 795, 1056, 1597
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 891, 1545
ErhI CCWWGG 4 cut(s) 371, 795, 1056, 1597
FalI AAGNNNNNCTT 4 cut(s) 788, 820, 1254, 1286
FaqI GGGAC 1 cut(s) 596
FbaI TGATCA 1 cut(s) 1408
FblI GTMKAC 1 cut(s) 1857
Fnu4HI GCNGC 4 cut(s) 368, 909, 1611, 1686
FokI GGATG 5 cut(s) 1190, 1196, 1207, 1256, 1862
FriOI GRGCYC 2 cut(s) 891, 1545
Fsp4HI GCNGC 4 cut(s) 368, 909, 1611, 1686
FspAI RTGCGCAY 1 cut(s) 2138
FspBI CTAG 6 cut(s) 413, 494, 600, 809, 1280, 1488
FspI TGCGCA 1 cut(s) 2138
GlaI GCGC 3 cut(s) 120, 1623, 2138
GluI GCNGC 4 cut(s) 368, 909, 1611, 1686
HaeIII GGCC 6 cut(s) 154, 1250, 1308, 1336, 1596, 2150
HapII CCGG 4 cut(s) 1784, 1883, 1985, 2003
HhaI GCGC 3 cut(s) 121, 1624, 2139
Hin6I GCGC 3 cut(s) 119, 1622, 2137
HinP1I GCGC 3 cut(s) 119, 1622, 2137
HincII GTYRAC 2 cut(s) 285, 569
HindII GTYRAC 2 cut(s) 285, 569
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 2098
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 4 cut(s) 1784, 1883, 1985, 2003
HphI GGTGA 6 cut(s) 179, 622, 662, 733, 1072, 1301
Hpy166II GTNNAC 4 cut(s) 163, 285, 569, 1858
Hpy188I TCNGA 4 cut(s) 447, 771, 1000, 2103
Hpy188III TCNNGA 7 cut(s) 19, 274, 474, 704, 1046, 1076, 1710
Hpy8I GTNNAC 4 cut(s) 163, 285, 569, 1858
HpyAV CCTTC 3 cut(s) 518, 1210, 2038
HpyCH4III ACNGT 5 cut(s) 99, 167, 980, 1168, 1507
HpyCH4IV ACGT 3 cut(s) 159, 571, 814
HpyCH4V TGCA 9 cut(s) 353, 545, 866, 911, 1446, 1685, 1791, 1910, 2161
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 872, 1256, 1342, 1619
HpyF3I CTNAG 7 cut(s) 126, 1338, 1416, 1557, 1644, 1726, 1864
HpySE526I ACGT 3 cut(s) 159, 571, 814
HspAI GCGC 3 cut(s) 119, 1622, 2137
KpnI GGTACC 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 1408
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
LguI GCTCTTC 2 cut(s) 879, 1550
LmnI GCTCC 3 cut(s) 306, 502, 1342
Lsp1109I GCAGC 4 cut(s) 379, 895, 1622, 1697
LweI GCATC 1 cut(s) 1800
MaeI CTAG 6 cut(s) 413, 494, 600, 809, 1280, 1488
MaeII ACGT 3 cut(s) 159, 571, 814
MaeIII GTNAC 6 cut(s) 46, 167, 610, 1530, 1564, 1931
MalI GATC 7 cut(s) 79, 1410, 1572, 1680, 1708, 1734, 1758
MboI GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
MfeI CAATTG 1 cut(s) 1400
MhlI GDGCHC 4 cut(s) 135, 303, 891, 1545
MlsI TGGCCA 3 cut(s) 1308, 1596, 2150
MluCI AATT 9 cut(s) 380, 546, 789, 984, 1400, 1448, 1696, 1970, 2010
MluNI TGGCCA 3 cut(s) 1308, 1596, 2150
MlyI GAGTC 1 cut(s) 2092
MmeI TCCRAC 5 cut(s) 612, 712, 819, 1491, 1638
Mox20I TGGCCA 3 cut(s) 1308, 1596, 2150
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 2 cut(s) 441, 1071
MscI TGGCCA 3 cut(s) 1308, 1596, 2150
MseI TTAA 9 cut(s) 42, 198, 284, 762, 893, 1188, 1926, 1973, 2055
MslI CAYNNNNRTG 2 cut(s) 1629, 2144
Msp20I TGGCCA 3 cut(s) 1308, 1596, 2150
MspI CCGG 4 cut(s) 1784, 1883, 1985, 2003
MspR9I CCNGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
MunI CAATTG 1 cut(s) 1400
Mva1269I GAATGC 2 cut(s) 269, 1924
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 5 cut(s) 376, 872, 1256, 1342, 1619
NciI CCSGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
NcoI CCATGG 1 cut(s) 371
NdeII GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
NlaIV GGNNCC 3 cut(s) 132, 1165, 1249
NmuCI GTSAC 4 cut(s) 46, 167, 610, 1564
NsbI TGCGCA 1 cut(s) 2138
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 2 cut(s) 1122, 1466
NspV TTCGAA 1 cut(s) 1354
PciI ACATGT 1 cut(s) 1118
PciSI GCTCTTC 2 cut(s) 879, 1550
PctI GAATGC 2 cut(s) 269, 1924
PdmI GAANNNNTTC 2 cut(s) 441, 1071
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 4 cut(s) 369, 910, 1612, 1687
PleI GAGTC 1 cut(s) 2092
PmaCI CACGTG 1 cut(s) 815
PmlI CACGTG 1 cut(s) 815
PpsI GAGTC 1 cut(s) 2092
Ppu21I YACGTR 1 cut(s) 815
PscI ACATGT 1 cut(s) 1118
PshBI ATTAAT 1 cut(s) 2055
Psp124BI GAGCTC 2 cut(s) 891, 1545
PspCI CACGTG 1 cut(s) 815
PspN4I GGNNCC 3 cut(s) 132, 1165, 1249
PspPI GGNCC 4 cut(s) 153, 1248, 1718, 1885
PsrI GAACNNNNNNTAC 2 cut(s) 1015, 1047
PstI CTGCAG 2 cut(s) 1687, 1912
RsaI GTAC 5 cut(s) 5, 1165, 1434, 1992, 2039
RsaNI GTAC 5 cut(s) 4, 1164, 1433, 1991, 2038
RseI CAYNNNNRTG 2 cut(s) 1629, 2144
SacI GAGCTC 2 cut(s) 891, 1545
SapI GCTCTTC 2 cut(s) 879, 1550
SaqAI TTAA 9 cut(s) 42, 198, 284, 762, 893, 1188, 1926, 1973, 2055
SatI GCNGC 4 cut(s) 368, 909, 1611, 1686
Sau3AI GATC 7 cut(s) 77, 1408, 1570, 1678, 1706, 1732, 1756
Sau96I GGNCC 4 cut(s) 153, 1248, 1718, 1885
SchI GAGTC 1 cut(s) 2092
ScrFI CCNGG 5 cut(s) 1785, 1883, 1985, 1986, 2004
SduI GDGCHC 4 cut(s) 135, 303, 891, 1545
SfaNI GCATC 1 cut(s) 1800
SfcI CTRYAG 4 cut(s) 95, 979, 1683, 1908
SfuI TTCGAA 1 cut(s) 1354
SinI GGWCC 2 cut(s) 1718, 1885
SmaI CCCGGG 1 cut(s) 1986
SmiMI CAYNNNNRTG 2 cut(s) 1629, 2144
SmlI CTYRAG 2 cut(s) 656, 687
SmoI CTYRAG 2 cut(s) 656, 687
SpeI ACTAGT 1 cut(s) 1487
Sse9I AATT 9 cut(s) 380, 546, 789, 984, 1400, 1448, 1696, 1970, 2010
SsiI CCGC 5 cut(s) 121, 1922, 2007, 2035, 2090
SspMI CTAG 6 cut(s) 413, 494, 600, 809, 1280, 1488
SstI GAGCTC 2 cut(s) 891, 1545
StyD4I CCNGG 5 cut(s) 1783, 1881, 1983, 1984, 2002
StyI CCWWGG 4 cut(s) 371, 795, 1056, 1597
TaaI ACNGT 5 cut(s) 99, 167, 980, 1168, 1507
TaiI ACGT 3 cut(s) 162, 574, 817
TaqI TCGA 4 cut(s) 192, 466, 1354, 2078
TasI AATT 9 cut(s) 380, 546, 789, 984, 1400, 1448, 1696, 1970, 2010
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 9 cut(s) 42, 198, 284, 762, 893, 1188, 1926, 1973, 2055
Tru9I TTAA 9 cut(s) 42, 198, 284, 762, 893, 1188, 1926, 1973, 2055
TscAI CASTG 5 cut(s) 868, 1137, 1245, 1573, 1917
TseFI GTSAC 4 cut(s) 46, 167, 610, 1564
TseI GCWGC 4 cut(s) 367, 908, 1610, 1685
Tsp45I GTSAC 4 cut(s) 46, 167, 610, 1564
TspGWI ACGGA 1 cut(s) 1200
TspMI CCCGGG 1 cut(s) 1984
TspRI CASTG 5 cut(s) 868, 1137, 1245, 1573, 1917
Van91I CCANNNNNTGG 1 cut(s) 970
VpaK11BI GGWCC 2 cut(s) 1718, 1885
VspI ATTAAT 1 cut(s) 2055
XagI CCTNNNNNAGG 1 cut(s) 1283
XapI RAATTY 1 cut(s) 984
XceI RCATGY 2 cut(s) 1122, 1466
XmaI CCCGGG 1 cut(s) 1984
XmiI GTMKAC 1 cut(s) 1857
XmnI GAANNNNTTC 2 cut(s) 441, 1071
XspI CTAG 6 cut(s) 413, 494, 600, 809, 1280, 1488
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.