Rh6AG162900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000290
Physical Location & Seq
Forward (+)
25425221 .. 25425850
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG162900.1

Sequence Viewer

Length: 366 bp
ATGTCCTCATCCTTTTGTAACAATTACATTGCCAATAGGGTTTTCTCTCTTTCTCTCTTAACACGCTGGGACGCGGGGTTGCCGTCAACACATAGGAGAGATCGATCTGTACTCCAACATCTTCAAAGCGTACCAACTCTCGAGAGATCGCTCTGCGCTCCAAGATCGCTCTGTCACCGCCTCTCTCTCTCTCTCTCTGGGCTGCCGTCAACATATCTTCCAAGATCGATCTGTGCTCCAATATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATCTGTGCTCCAAGCTCTTCAAAGCGTACCAACTCTCGAGAGATCGATTTCAACAGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

9.96

Isoelectric Point (pI)

85.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 74, 178
AfaI GTAC 4 cut(s) 111, 132, 284, 330
AgsI TTSAA 5 cut(s) 125, 249, 277, 323, 354
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw21I GWGCWC 3 cut(s) 238, 266, 312
Ama87I CYCGRG 2 cut(s) 140, 338
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 2 cut(s) 140, 338
Bbv12I GWGCWC 3 cut(s) 238, 266, 312
BbvI GCAGC 1 cut(s) 189
BceAI ACGGC 2 cut(s) 67, 190
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmeT110I CYCGRG 2 cut(s) 140, 338
Bsa29I ATCGAT 5 cut(s) 103, 227, 255, 301, 347
Bse3DI GCAATG 1 cut(s) 27
BseCI ATCGAT 5 cut(s) 103, 227, 255, 301, 347
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 74
BshVI ATCGAT 5 cut(s) 103, 227, 255, 301, 347
BsiHKAI GWGCWC 3 cut(s) 238, 266, 312
BsiHKCI CYCGRG 2 cut(s) 140, 338
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsoBI CYCGRG 2 cut(s) 140, 338
Bsp1286I GDGCHC 3 cut(s) 238, 266, 312
BspACI CCGC 2 cut(s) 74, 178
BspDI ATCGAT 5 cut(s) 103, 227, 255, 301, 347
BspFNI CGCG 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 324
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 158
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 189
Bsu15I ATCGAT 5 cut(s) 103, 227, 255, 301, 347
BsuTUI ATCGAT 5 cut(s) 103, 227, 255, 301, 347
BtsCI GGATG 1 cut(s) 8
CfoI GCGC 1 cut(s) 158
ClaI ATCGAT 5 cut(s) 103, 227, 255, 301, 347
CseI GACGC 1 cut(s) 80
Csp6I GTAC 4 cut(s) 110, 131, 283, 329
CviJI RGCY 2 cut(s) 202, 317
CviKI_1 RGCY 2 cut(s) 202, 317
CviQI GTAC 4 cut(s) 110, 131, 283, 329
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 140, 338
FaiI YATR 2 cut(s) 93, 214
FaqI GGGAC 1 cut(s) 83
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 70
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 87, 210
HindII GTYRAC 2 cut(s) 87, 210
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 87, 210
Hpy188III TCNNGA 5 cut(s) 140, 142, 294, 338, 340
Hpy8I GTNNAC 2 cut(s) 87, 210
HspAI GCGC 1 cut(s) 156
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 4 cut(s) 163, 241, 269, 315
LpnPI CCDG 2 cut(s) 52, 183
Lsp1109I GCAGC 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 17, 173
MboII GAAGA 5 cut(s) 113, 209, 237, 265, 311
MhlI GDGCHC 3 cut(s) 238, 266, 312
MluCI AATT 2 cut(s) 22, 361
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 16, 191
MseI TTAA 1 cut(s) 59
MvnI CGCG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 173
PaeR7I CTCGAG 2 cut(s) 140, 338
PciSI GCTCTTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 66
RsaI GTAC 4 cut(s) 111, 132, 284, 330
RsaNI GTAC 4 cut(s) 110, 131, 283, 329
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 203
SduI GDGCHC 3 cut(s) 238, 266, 312
SetI ASST 1 cut(s) 319
Sfr274I CTCGAG 2 cut(s) 140, 338
SlaI CTCGAG 2 cut(s) 140, 338
SmlI CTYRAG 2 cut(s) 140, 338
SmoI CTYRAG 2 cut(s) 140, 338
Sse9I AATT 2 cut(s) 22, 361
SsiI CCGC 2 cut(s) 74, 178
TaqI TCGA 8 cut(s) 103, 141, 227, 255, 293, 301, 339, 347
TasI AATT 2 cut(s) 22, 361
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 173
XhoI CTCGAG 2 cut(s) 140, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.