Rh6CG307600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000290
Physical Location & Seq
Forward (+)
48808406 .. 48835134
26729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG307600.1

Sequence Viewer

Length: 729 bp
ATGGGTTCCAAGAAGAAGGGAAAGTCTGAAAGAAAGAAAAAATCAGTGGAAGAAGCTGATGTGAAGACTTGTCCCGAGTCTGATGAGTCTGTTGAGAAGCAAGTAGAATCTATATCAGCAGACACCGTCACAACCAGCAAATCAACGAAAATTAGAGGGAAGCGAAGTGTGGTGGAAATGTACAATGTTTTGATCAAGAAAGCATTGGGTAAAAAGTTGAAAGTGACATACACTGACACATGCAATCCTAATGGACGAGCACGGCACAATCTGCAATCATACATAGGAATGCTGGCGCGTAAAATGGTGCCGATCAACATTGAAAGCTGGCCTGCAGTGGATAAAGACTTGAAAGATAAAATTTGGATTGATGTCCAGGATACATTCAAAGTGGCCCCTGAAAGCAAGAAATTGGTGTTGACATCTGCCGACACTAAATGGAGACAATTCAAGACCTACTTAACAAATAAGCATGCGCTGCCATACTTGGGGAAGAAGAAGAAACTGAGGAAGCCACCGAAGCAATATACATTCGTTGGGTTACAACCATGGAAGGAATTTGTAACTCAGAGGAAGACAGAGGAATGGTTGAGAGATACTTGGCCTGAAGGAGAGGTAATTGATCGCGCTATTATATGGAAGAAAGCCCGTTTACTAAAAAATGGGGAGATAAGTGAAGAGGTCACACCGGTAGCAAGAAAGATAGGTCGACTGGTAATACCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

242

Amino Acids

27.86

Weight (kDa)

9.91

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 709
AccII CGCG 2 cut(s) 298, 627
AcsI RAATTY 2 cut(s) 360, 557
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 688
AgsI TTSAA 5 cut(s) 220, 323, 352, 388, 451
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 56, 327
AluI AGCT 2 cut(s) 56, 327
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 329, 393, 602
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 2 cut(s) 360, 557
AsiGI ACCGGT 1 cut(s) 688
AspLEI GCGC 3 cut(s) 298, 478, 629
AspS9I GGNCC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 74
BanI GGYRCC 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 71, 581
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 465
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 373
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 436
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
Bme1390I CCNGG 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 3 cut(s) 7, 309, 396
BmrFI CCNGG 1 cut(s) 377
BpiI GAAGAC 2 cut(s) 71, 581
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 1 cut(s) 688
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 1 cut(s) 717
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 548
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 497, 581
BseNI ACTGG 1 cut(s) 717
BseXI GCAGC 1 cut(s) 465
Bsh1236I CGCG 2 cut(s) 298, 627
BshFI GGCC 3 cut(s) 331, 395, 604
BshNI GGYRCC 1 cut(s) 307
BshTI ACCGGT 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 3 cut(s) 331, 395, 604
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 3 cut(s) 192, 312, 622
Bsp19I CCATGG 1 cut(s) 548
BspANI GGCC 3 cut(s) 331, 395, 604
BspCNI CTCAG 2 cut(s) 498, 580
BspFNI CGCG 2 cut(s) 298, 627
BspLI GGNNCC 3 cut(s) 7, 309, 396
BspMAI CTGCAG 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 688
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 717
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 3 cut(s) 192, 312, 622
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 672
BstAPI GCANNNNNTGC 2 cut(s) 271, 478
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 294, 329, 333, 474
BstDEI CTNAG 2 cut(s) 506, 567
BstDSI CCRYGG 1 cut(s) 548
BstFNI CGCG 2 cut(s) 298, 627
BstHHI GCGC 3 cut(s) 298, 478, 629
BstKTI GATC 3 cut(s) 195, 315, 625
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 3 cut(s) 192, 312, 622
BstMWI GCNNNNNNNGC 3 cut(s) 271, 478, 520
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 243, 476
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 2 cut(s) 298, 627
BstV1I GCAGC 1 cut(s) 465
BstV2I GAAGAC 2 cut(s) 71, 581
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 331, 395, 604
BtgI CCRYGG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 51, 231, 342
Cac8I GCNNGC 4 cut(s) 294, 329, 333, 474
CfoI GCGC 3 cut(s) 298, 478, 629
Cfr10I RCCGGY 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 688
CviAII CATG 3 cut(s) 240, 473, 549
CviJI RGCY 7 cut(s) 56, 327, 331, 395, 514, 604, 647
CviKI_1 RGCY 7 cut(s) 56, 327, 331, 395, 514, 604, 647
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 506, 567
DpnI GATC 3 cut(s) 194, 314, 624
DpnII GATC 3 cut(s) 192, 312, 622
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 3 cut(s) 243, 476, 552
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 239, 472, 548
FbaI TGATCA 1 cut(s) 192
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 479
GlaI GCGC 3 cut(s) 297, 477, 628
GluI GCNGC 1 cut(s) 479
HaeIII GGCC 3 cut(s) 331, 395, 604
HapII CCGG 1 cut(s) 689
HhaI GCGC 3 cut(s) 298, 478, 629
Hin1II CATG 3 cut(s) 243, 476, 552
Hin6I GCGC 3 cut(s) 296, 476, 627
HinP1I GCGC 3 cut(s) 296, 476, 627
HincII GTYRAC 2 cut(s) 420, 710
HindII GTYRAC 2 cut(s) 420, 710
HinfI GANTC 3 cut(s) 77, 86, 107
HpaII CCGG 1 cut(s) 689
Hpy166II GTNNAC 3 cut(s) 420, 653, 710
Hpy188I TCNGA 3 cut(s) 28, 82, 570
Hpy188III TCNNGA 3 cut(s) 74, 196, 451
Hpy8I GTNNAC 3 cut(s) 420, 653, 710
HpyAV CCTTC 3 cut(s) 10, 547, 602
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 243, 274, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 271, 478, 520
HpyF3I CTNAG 2 cut(s) 506, 567
Hsp92II CATG 3 cut(s) 243, 476, 552
HspAI GCGC 3 cut(s) 296, 476, 627
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 3 cut(s) 192, 312, 622
Lsp1109I GCAGC 1 cut(s) 465
MaeIII GTNAC 5 cut(s) 127, 223, 540, 562, 682
MalI GATC 3 cut(s) 194, 314, 624
MboI GATC 3 cut(s) 192, 312, 622
MboII GAAGA 9 cut(s) 25, 62, 76, 505, 508, 511, 586, 652, 689
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 6 cut(s) 150, 360, 410, 446, 557, 618
MlyI GAGTC 2 cut(s) 86, 95
MnlI CCTC 6 cut(s) 149, 501, 564, 574, 607, 673
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 2 cut(s) 298, 627
MwoI GCNNNNNNNGC 3 cut(s) 271, 478, 520
NcoI CCATGG 1 cut(s) 548
NdeII GATC 3 cut(s) 192, 312, 622
NlaIII CATG 3 cut(s) 243, 476, 552
NlaIV GGNNCC 3 cut(s) 7, 309, 396
NmuCI GTSAC 3 cut(s) 127, 223, 682
NspI RCATGY 2 cut(s) 243, 476
PaeI GCATGC 1 cut(s) 476
PctI GAATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 375
PinAI ACCGGT 1 cut(s) 688
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 2 cut(s) 85, 94
PpsI GAGTC 2 cut(s) 85, 94
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 7, 309, 396
PspPI GGNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 287
SalI GTCGAC 1 cut(s) 708
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 3 cut(s) 192, 312, 622
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 2 cut(s) 86, 95
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 262
SetI ASST 6 cut(s) 58, 329, 458, 618, 684, 709
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 287
SphI GCATGC 1 cut(s) 476
Sse9I AATT 6 cut(s) 150, 360, 410, 446, 557, 618
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 709
TasI AATT 6 cut(s) 150, 360, 410, 446, 557, 618
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 3 cut(s) 51, 238, 342
TseFI GTSAC 3 cut(s) 127, 223, 682
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 3 cut(s) 127, 223, 682
TspRI CASTG 3 cut(s) 51, 238, 342
Tth111I GACNNNGTC 1 cut(s) 125
XapI RAATTY 2 cut(s) 360, 557
XceI RCATGY 2 cut(s) 243, 476
XmiI GTMKAC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.