Rh6CG065400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000290
Physical Location & Seq
Forward (+)
6480919 .. 6481528
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG065400.1

Sequence Viewer

Length: 351 bp
ATGTTGAGGGGTTTTGGGTTCAGCAGTTCACCGCTGCAAGAGAACAATAGAGATTTCCATTTTGTAGCAATGGGTTCCAAGAAGGGAATTCGCAAATCTCCTAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTCTGTATCAGCCAACACTGTCATGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTGGTTGCCATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTGACATACACCGACACGGGCAATCCAAATGGATCAATAAGGCACACTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.87

Weight (kDa)

9.95

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 221, 278
AluI AGCT 2 cut(s) 221, 278
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 131, 146
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 224
ApeKI GCWGC 3 cut(s) 34, 221, 224
ApoI RAATTY 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 21, 208, 211
BcoDI GTCTC 2 cut(s) 131, 146
BfaI CTAG 2 cut(s) 102, 228
BisI GCNGC 3 cut(s) 35, 222, 225
BlsI GCNGC 3 cut(s) 36, 223, 226
BmiI GGNNCC 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 21, 208, 211
BsiHKAI GWGCWC 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 131, 146
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 255
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 2 cut(s) 131, 146
BstMBI GATC 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 21, 208, 211
BtsIMutI CAGTG 2 cut(s) 198, 210
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 204
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 205, 253
CviJI RGCY 3 cut(s) 194, 221, 278
CviKI_1 RGCY 3 cut(s) 194, 221, 278
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraI TTTAAA 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 87
FaeI CATG 2 cut(s) 208, 256
FaiI YATR 4 cut(s) 206, 254, 304, 349
FalI AAGNNNNNCTT 1 cut(s) 328
FatI CATG 2 cut(s) 204, 252
Fnu4HI GCNGC 3 cut(s) 35, 222, 225
Fsp4HI GCNGC 3 cut(s) 35, 222, 225
FspBI CTAG 2 cut(s) 102, 228
GluI GCNGC 3 cut(s) 35, 222, 225
Hin1II CATG 2 cut(s) 208, 256
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 2 cut(s) 182, 215
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 205, 271
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 208, 256
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 1 cut(s) 162
Lsp1109I GCAGC 3 cut(s) 21, 208, 211
MaeI CTAG 2 cut(s) 102, 228
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 1 cut(s) 87
MnlI CCTC 3 cut(s) 98, 127, 224
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 34, 221
NdeII GATC 1 cut(s) 329
NlaIII CATG 2 cut(s) 208, 256
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 298
PagI TCATGA 1 cut(s) 204
PfeI GAWTC 2 cut(s) 182, 215
PkrI GCNGC 3 cut(s) 36, 223, 226
PspN4I GGNNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 35, 222, 225
Sau3AI GATC 1 cut(s) 329
SduI GDGCHC 1 cut(s) 212
SetI ASST 4 cut(s) 151, 223, 264, 280
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 1 cut(s) 87
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 102, 228
TaaI ACNGT 1 cut(s) 202
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 182, 215
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 205, 217
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 34, 221, 224
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 205, 217
XapI RAATTY 1 cut(s) 87
XspI CTAG 2 cut(s) 102, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.