Rh2CG417500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000290
Physical Location & Seq
Reverse (-)
57078031 .. 57083401
5371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG417500.1

Sequence Viewer

Length: 393 bp
ATGGGTTCCAAGAAGGGAAAATCAAAAGGAGGCAAAAAATCAAAGAATAAAGCGGATAATGATACTAGTCCTGTTGAGACTGATGGCATGGTTGATGCTGGAGAGGATTCTGCTACAGTTGAAACTATGACGAGCACGGAATCAGCCAAAGGAAAAAGCAGAGGAAAGCGAACTGTGGTTGCTTTGTGCAAGGTTGTGGTGAAGAAAGCACTTGGGAGGAAATTGAAGGTGACCTACAGTGAAACAGGCAATCCAAATGGCAGAACACGGCACATTCTACAGTCGTATATAGGCATGTTGGTGCGGAAAATGGTTCCCATCAACGTTGTTAGCTGGCCTGAGGTGGATCGAGACTTGAAAGAAAATCTTTGGATCAATGTTCAGGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

130

Amino Acids

14.21

Weight (kDa)

10.0

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 304
AclI AACGTT 1 cut(s) 324
AclWI GGATC 2 cut(s) 354, 380
AgsI TTSAA 3 cut(s) 122, 226, 358
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 71, 345
AlwI GGATC 2 cut(s) 354, 380
AoxI GGCC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 211, 241
AxyI CCTNAGG 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 2 cut(s) 77, 326
BceAI ACGGC 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 71, 345
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 3 cut(s) 114, 235, 278
BmiI GGNNCC 2 cut(s) 7, 315
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 71, 345
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 346, 372
BspACI CCGC 2 cut(s) 53, 304
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 7, 315
BspPI GGATC 2 cut(s) 354, 380
BssMI GATC 2 cut(s) 346, 372
Bst4CI ACNGT 4 cut(s) 118, 175, 239, 282
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 339
BstEII GGTNACC 1 cut(s) 229
BstKTI GATC 2 cut(s) 349, 375
BstMAI GTCTC 2 cut(s) 71, 345
BstMBI GATC 2 cut(s) 346, 372
BstNSI RCATGY 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 229
BstSFI CTRYAG 3 cut(s) 114, 235, 278
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 335
CviAII CATG 2 cut(s) 88, 295
CviJI RGCY 3 cut(s) 146, 333, 337
CviKI_1 RGCY 3 cut(s) 146, 333, 337
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 348, 374
DpnII GATC 2 cut(s) 346, 372
Eco81I CCTNAGG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
FaeI CATG 2 cut(s) 91, 298
FaiI YATR 5 cut(s) 89, 128, 288, 290, 296
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 2 cut(s) 87, 294
FspBI CTAG 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 337
Hin1II CATG 2 cut(s) 91, 298
HinfI GANTC 2 cut(s) 107, 140
HphI GGTGA 2 cut(s) 211, 241
Hpy188III TCNNGA 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 7, 220
HpyCH4III ACNGT 4 cut(s) 118, 175, 239, 282
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 91, 298
Kzo9I GATC 2 cut(s) 346, 372
LpnPI CCDG 6 cut(s) 84, 84, 231, 319, 351, 368
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 348, 374
MboI GATC 2 cut(s) 346, 372
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 221
MnlI CCTC 5 cut(s) 23, 97, 155, 210, 334
MslI CAYNNNNRTG 1 cut(s) 299
NdeII GATC 2 cut(s) 346, 372
NlaIII CATG 2 cut(s) 91, 298
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 298
PfeI GAWTC 2 cut(s) 107, 140
Psp1406I AACGTT 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 7, 315
RseI CAYNNNNRTG 1 cut(s) 299
Sau3AI GATC 2 cut(s) 346, 372
SduI GDGCHC 1 cut(s) 137
SetI ASST 7 cut(s) 195, 231, 236, 327, 335, 345, 392
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 3 cut(s) 114, 235, 278
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 221
SsiI CCGC 2 cut(s) 53, 304
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 4 cut(s) 118, 175, 239, 282
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 349
TasI AATT 1 cut(s) 221
TfiI GAWTC 2 cut(s) 107, 140
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 244
XceI RCATGY 1 cut(s) 298
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.