Rmu_sc0023684.1_g000002

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023684.1
OG0000290
Physical Location & Seq
Reverse (-)
7423 .. 8391
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023684.1_g000002.1.cds

Sequence Viewer

Length: 621 bp
atggcagaggtagctccggtggccaatgatattgataatttgttggctaagaaaaataaaggcgagctcgccgcctcggggtctaatgatgttctaacaatggcactaaaaactccggaatattctggtagagtaaggggtgttgggggtaatgttacccttctacttacttccatcttcctagacagagaaggcaaagcatttcgaaggctatgtttctggagcatcaaaggaagtagtcatagtaaaactatgttcaatggtaatgatgctttaaaatcatctcaatctacctatgattttgaaattgaggaagtggaggacatcgaggtaccaaaaaagctaggcaatatgaagaataaatcatgcaagctggcagcgggttccattcacaatattgtggctttaggcacaataattgaagagaatgactctaatattactgtacatggtattcctttacaagagggtcattcgagggttgctgttgatgtgtccattgatgcaaatgctttgcttcctgtcccaattccagatgaattggagaatgttggtcaagctgtttggagctatgtggcttggccaaagaagctcattgtgttgaatatggaaaaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

206

Amino Acids

22.36

Weight (kDa)

5.62

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 2 cut(s) 72, 380
AcoI YGGCCR 2 cut(s) 21, 581
AfaI GTAC 2 cut(s) 333, 447
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 259, 305, 422, 604
AluBI AGCT 7 cut(s) 14, 67, 343, 373, 560, 570, 592
AluI AGCT 7 cut(s) 14, 67, 343, 373, 560, 570, 592
Alw21I GWGCWC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 21, 581
ApeKI GCWGC 1 cut(s) 377
Asp718I GGTACC 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 76
BalI TGGCCA 2 cut(s) 23, 583
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 389
BccI CCATC 1 cut(s) 182
BfaI CTAG 2 cut(s) 182, 344
BisI GCNGC 2 cut(s) 72, 378
BlsI GCNGC 2 cut(s) 73, 379
BmeT110I CYCGRG 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 333, 385
BmsI GCATC 3 cut(s) 234, 259, 493
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 16, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 389
BshFI GGCC 2 cut(s) 23, 583
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 17, 116
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 2 cut(s) 23, 583
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 445
BspACI CCGC 2 cut(s) 72, 380
BspANI GGCC 2 cut(s) 23, 583
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 333, 385
BspT104I TTCGAA 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 417
BstAUI TGTACA 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 4 cut(s) 65, 69, 371, 375
BstDEI CTNAG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 589
BstV1I GCAGC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 23, 583
Cac8I GCNNGC 4 cut(s) 65, 69, 371, 375
Csp6I GTAC 2 cut(s) 332, 446
CviAII CATG 2 cut(s) 366, 449
CviQI GTAC 2 cut(s) 332, 446
DdeI CTNAG 1 cut(s) 48
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 2 cut(s) 21, 581
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 2 cut(s) 369, 452
FaqI GGGAC 1 cut(s) 509
FatI CATG 2 cut(s) 365, 448
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 72, 378
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 72, 378
FspBI CTAG 2 cut(s) 182, 344
GluI GCNGC 2 cut(s) 72, 378
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 2 cut(s) 23, 583
HapII CCGG 2 cut(s) 17, 116
Hin1II CATG 2 cut(s) 369, 452
HinfI GANTC 1 cut(s) 431
HpaII CCGG 2 cut(s) 17, 116
Hpy188III TCNNGA 3 cut(s) 116, 220, 533
HpyAV CCTTC 3 cut(s) 170, 185, 201
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 2 cut(s) 369, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 589
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 369, 452
Kpn2I TCCGGA 1 cut(s) 115
KpnI GGTACC 1 cut(s) 335
LmnI GCTCC 3 cut(s) 19, 222, 567
LpnPI CCDG 7 cut(s) 30, 111, 129, 205, 359, 534, 546
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 3 cut(s) 234, 259, 493
MaeI CTAG 2 cut(s) 182, 344
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 3 cut(s) 169, 367, 434
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 23, 583
MluCI AATT 5 cut(s) 37, 306, 417, 528, 539
MluNI TGGCCA 2 cut(s) 23, 583
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 85, 304, 313, 322, 460, 471
Mox20I TGGCCA 2 cut(s) 23, 583
MroI TCCGGA 1 cut(s) 115
MscI TGGCCA 2 cut(s) 23, 583
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 2 cut(s) 23, 583
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 17, 116
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 589
NlaIII CATG 2 cut(s) 369, 452
NlaIV GGNNCC 2 cut(s) 333, 385
NspV TTCGAA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 73, 379
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 333, 385
RsaI GTAC 2 cut(s) 333, 447
RsaNI GTAC 2 cut(s) 332, 446
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 72, 378
SchI GAGTC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 234, 259, 493
SfuI TTCGAA 1 cut(s) 205
Sse9I AATT 5 cut(s) 37, 306, 417, 528, 539
SsiI CCGC 2 cut(s) 72, 380
SspI AATATT 3 cut(s) 122, 397, 439
SspMI CTAG 2 cut(s) 182, 344
SstI GAGCTC 1 cut(s) 69
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 205, 327, 476
TasI AATT 5 cut(s) 37, 306, 417, 528, 539
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 368, 552
XspI CTAG 2 cut(s) 182, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.