Rh6CG310500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000290
Physical Location & Seq
Reverse (-)
49498656 .. 49505425
6770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG310500.1

Sequence Viewer

Length: 765 bp
ATGAAGTTGAACATGAATGATGGTGTTCCATTCTCATATGGAAAGGAGGGCATCTTGTTGAGGAAGTGCTTTAACAACAAGAGGGTGTCAAATCTGAGGAGGTGCAAAAGCGTTTGCTACATTTTGGTTTTCACAAACTTCAAGATAAATCCAAGTTTTCAGGAAGCCATGGGTTCCAAGAAGAAGGGAAAGTCTGAAAGAAAGAAAAAATCAGTGGAAGAAGCTGATGTGAAGACTTGTCCCGAGTCTGATGAGTCTGTTGAGAAGCAAGTAGAATCTATATCAGCAGACACCGTCACAACCAGCAAATCAACGAAAATTAGAGGGAAGCGAAGTGTGGTGGAAATGTACAATGTTTTGATCAAGAAAGCATTGGGTAAAAAGTTGAAAGTGACATACACTGACACATGCAATCCTAATGGACGAGCACGGCACAATCTGCAATCATACATAGGAATGCTGGCGCGTAAAATGGTGCCGATCAACATTGAAAGCTGGCCTGCAGTGGATAAAGACTTGAAAGATAAAATTTGGATTGATGTCCAGGATACATTCAAAGTGGCCCCTGAAAGCAAGAAATTGGTGTTGACATCTGCCGACACTAAATGGAGACAATTCAAGACCTACTTAACAAATAAGCATGCGCTGCCATACTTGGGGAAGAAGAAGAAACTGAGGAAGCCACCGAAGCAATATACATTCGTTGGGTTACAACCATGGAAGGAATTTGTAACTCAGAGGAAGACAGAGGAATGGTTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

254

Amino Acids

29.32

Weight (kDa)

9.93

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccII CGCG 1 cut(s) 466
AcsI RAATTY 2 cut(s) 528, 725
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 656
AgsI TTSAA 7 cut(s) 10, 142, 388, 491, 520, 556, 619
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 2 cut(s) 224, 495
AluI AGCT 2 cut(s) 224, 495
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 604
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 497, 561
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 2 cut(s) 528, 725
AspLEI GCGC 2 cut(s) 466, 646
AspS9I GGNCC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 239, 749
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 633
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 545
BciVI GTATCC 1 cut(s) 541
BclI TGATCA 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 604
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 3 cut(s) 175, 477, 564
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 239, 749
BsaJI CCNNGG 2 cut(s) 168, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 168, 716
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 3 cut(s) 86, 665, 749
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 633
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 2 cut(s) 499, 563
BshNI GGYRCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 2 cut(s) 499, 563
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 360, 480
Bsp19I CCATGG 2 cut(s) 168, 716
BspANI GGCC 2 cut(s) 499, 563
BspCNI CTCAG 3 cut(s) 87, 666, 748
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 175, 477, 564
BspMAI CTGCAG 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 475
BsrGI TGTACA 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 168, 716
BssMI GATC 2 cut(s) 360, 480
BssT1I CCWWGG 2 cut(s) 168, 716
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 295
BstAPI GCANNNNNTGC 2 cut(s) 439, 646
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 4 cut(s) 462, 497, 501, 642
BstDEI CTNAG 3 cut(s) 95, 674, 735
BstDSI CCRYGG 2 cut(s) 168, 716
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 2 cut(s) 466, 646
BstKTI GATC 2 cut(s) 363, 483
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 2 cut(s) 360, 480
BstMWI GCNNNNNNNGC 3 cut(s) 439, 646, 688
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 2 cut(s) 411, 644
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 2 cut(s) 239, 749
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 2 cut(s) 499, 563
BtgI CCRYGG 2 cut(s) 168, 716
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 3 cut(s) 219, 399, 510
Cac8I GCNNGC 4 cut(s) 462, 497, 501, 642
CfoI GCGC 2 cut(s) 466, 646
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 349
CviAII CATG 5 cut(s) 13, 169, 408, 641, 717
CviJI RGCY 6 cut(s) 167, 224, 495, 499, 563, 682
CviKI_1 RGCY 6 cut(s) 167, 224, 495, 499, 563, 682
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 95, 674, 735
DpnI GATC 2 cut(s) 362, 482
DpnII GATC 2 cut(s) 360, 480
Eco130I CCWWGG 2 cut(s) 168, 716
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 168, 716
ErhI CCWWGG 2 cut(s) 168, 716
FaeI CATG 5 cut(s) 16, 172, 411, 644, 720
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 1 cut(s) 225
FatI CATG 5 cut(s) 12, 168, 407, 640, 716
FauNDI CATATG 1 cut(s) 37
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 647
Fsp4HI GCNGC 1 cut(s) 647
GlaI GCGC 2 cut(s) 465, 645
GluI GCNGC 1 cut(s) 647
HaeIII GGCC 2 cut(s) 499, 563
HhaI GCGC 2 cut(s) 466, 646
Hin1II CATG 5 cut(s) 16, 172, 411, 644, 720
Hin6I GCGC 2 cut(s) 464, 644
HinP1I GCGC 2 cut(s) 464, 644
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 3 cut(s) 245, 254, 275
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 4 cut(s) 96, 196, 250, 738
Hpy188III TCNNGA 5 cut(s) 142, 161, 242, 364, 619
Hpy8I GTNNAC 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 178, 715
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 4 cut(s) 105, 411, 442, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 646, 688
HpyF3I CTNAG 3 cut(s) 95, 674, 735
Hsp92II CATG 5 cut(s) 16, 172, 411, 644, 720
HspAI GCGC 2 cut(s) 464, 644
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 360, 480
LpnPI CCDG 8 cut(s) 146, 316, 446, 481, 513, 530, 557, 579
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 1 cut(s) 60
MaeIII GTNAC 4 cut(s) 295, 391, 708, 730
MalI GATC 2 cut(s) 362, 482
MboI GATC 2 cut(s) 360, 480
MboII GAAGA 7 cut(s) 193, 230, 244, 673, 676, 679, 754
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 318, 528, 578, 614, 725
MlyI GAGTC 2 cut(s) 254, 263
MnlI CCTC 9 cut(s) 40, 54, 75, 90, 93, 317, 669, 732, 742
MseI TTAA 2 cut(s) 72, 629
MslI CAYNNNNRTG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 3 cut(s) 439, 646, 688
NcoI CCATGG 2 cut(s) 168, 716
NdeI CATATG 1 cut(s) 37
NdeII GATC 2 cut(s) 360, 480
NlaIII CATG 5 cut(s) 16, 172, 411, 644, 720
NlaIV GGNNCC 3 cut(s) 175, 477, 564
NmuCI GTSAC 2 cut(s) 295, 391
NspI RCATGY 2 cut(s) 411, 644
PaeI GCATGC 1 cut(s) 644
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 1 cut(s) 648
PleI GAGTC 2 cut(s) 253, 262
PpsI GAGTC 2 cut(s) 253, 262
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 175, 477, 564
PspPI GGNCC 1 cut(s) 562
PstI CTGCAG 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 2 cut(s) 72, 629
SatI GCNGC 1 cut(s) 647
Sau3AI GATC 2 cut(s) 360, 480
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 2 cut(s) 254, 263
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 430
SetI ASST 4 cut(s) 104, 226, 497, 626
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 455
SphI GCATGC 1 cut(s) 644
Sse9I AATT 5 cut(s) 318, 528, 578, 614, 725
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 2 cut(s) 168, 716
TaaI ACNGT 1 cut(s) 295
TasI AATT 5 cut(s) 318, 528, 578, 614, 725
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 72, 629
Tru9I TTAA 2 cut(s) 72, 629
TscAI CASTG 3 cut(s) 219, 406, 510
TseFI GTSAC 2 cut(s) 295, 391
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 2 cut(s) 295, 391
TspDTI ATGAA 2 cut(s) 17, 29
TspRI CASTG 3 cut(s) 219, 406, 510
Tth111I GACNNNGTC 1 cut(s) 293
XapI RAATTY 2 cut(s) 528, 725
XceI RCATGY 2 cut(s) 411, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.