Rh4AG377200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000290
Physical Location & Seq
Forward (+)
68432102 .. 68432445
344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG377200.1

Sequence Viewer

Length: 344 bp
ATGTCGAAGAAACCTTCGTCTTCCGAAGCACGCCCTCATCGGGAAATCCTTGAACGGATGTCGGATTCTCCAGACTCCGACGAGGAGACTCAGATCGGAGCACCCTGTCGCCCTAGACAGGTCGCTCGCCCCGGCGTGGCTGTTTCTTGCGCTCGGATCAGAGTTTCTCGCCCTCCGACCGGCGGTTCTTGCGCACATGCCGGCGGTTCTTTTCACCTCAAGCCTGTTGGGGGATCTCCTCCCGCCGCACCTGCTGGATCTCCTCCCCCCGCCCCTGCCGGATCTCCACCACCCTCTCGGGCCACAGGGGCACCACTCGCTCGGGCCGCAGGGACGCCCTCAGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.4

Weight (kDa)

10.27

Isoelectric Point (pI)

88.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc16I TGCGCA 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 6 cut(s) 183, 204, 243, 246, 270, 327
AclWI GGATC 4 cut(s) 164, 241, 265, 289
AcyI GRCGYC 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 40, 118, 136, 179, 182, 230
AgsI TTSAA 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 4 cut(s) 164, 241, 265, 289
Ama87I CYCGRG 2 cut(s) 297, 321
AoxI GGCC 2 cut(s) 300, 324
AspLEI GCGC 2 cut(s) 152, 194
AspS9I GGNCC 2 cut(s) 300, 324
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 2 cut(s) 297, 321
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 2 cut(s) 246, 327
BlsI GCNGC 2 cut(s) 247, 328
Bme1390I CCNGG 1 cut(s) 132
BmeT110I CYCGRG 2 cut(s) 297, 321
BmgT120I GGNCC 2 cut(s) 300, 324
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 118, 136, 179, 182, 230
Bse118I RCCGGY 2 cut(s) 179, 200
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 6 cut(s) 40, 118, 136, 179, 182, 230
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 98, 228, 252
BseSI GKGCMC 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 302, 326
BshNI GGYRCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 103
BsiHKCI CYCGRG 2 cut(s) 297, 321
BsiSI CCGG 4 cut(s) 132, 180, 201, 279
BslI CCNNNNNNNGG 6 cut(s) 40, 118, 136, 179, 182, 230
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 302, 326
BsoBI CYCGRG 2 cut(s) 297, 321
Bsp1286I GDGCHC 2 cut(s) 103, 313
Bsp143I GATC 5 cut(s) 93, 156, 233, 257, 281
BspACI CCGC 6 cut(s) 183, 204, 243, 246, 270, 327
BspANI GGCC 2 cut(s) 302, 326
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 4 cut(s) 164, 241, 265, 289
BspT107I GGYRCC 1 cut(s) 310
BsrFI RCCGGY 2 cut(s) 179, 200
BssAI RCCGGY 2 cut(s) 179, 200
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 5 cut(s) 93, 156, 233, 257, 281
BssNI GRCGYC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 31, 127, 202
BstDEI CTNAG 2 cut(s) 90, 340
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 152, 194
BstKTI GATC 5 cut(s) 96, 159, 236, 260, 284
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 5 cut(s) 93, 156, 233, 257, 281
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 5 cut(s) 189, 251, 308, 317, 326
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 233, 257, 281
BstYI RGATCY 3 cut(s) 233, 257, 281
BsuRI GGCC 2 cut(s) 302, 326
BtsCI GGATG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 31, 127, 202
CfoI GCGC 2 cut(s) 152, 194
Cfr10I RCCGGY 2 cut(s) 179, 200
Cfr13I GGNCC 2 cut(s) 300, 324
CviAII CATG 1 cut(s) 197
CviJI RGCY 4 cut(s) 140, 223, 302, 326
CviKI_1 RGCY 4 cut(s) 140, 223, 302, 326
DdeI CTNAG 2 cut(s) 90, 340
DpnI GATC 5 cut(s) 95, 158, 235, 259, 283
DpnII GATC 5 cut(s) 93, 156, 233, 257, 281
Eco88I CYCGRG 2 cut(s) 297, 321
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
FauI CCCGC 2 cut(s) 250, 277
Fnu4HI GCNGC 2 cut(s) 246, 327
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 246, 327
FspBI CTAG 1 cut(s) 114
FspI TGCGCA 1 cut(s) 193
GlaI GCGC 2 cut(s) 151, 193
GluI GCNGC 2 cut(s) 246, 327
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 302, 326
HapII CCGG 4 cut(s) 132, 180, 201, 279
HhaI GCGC 2 cut(s) 152, 194
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 2 cut(s) 150, 192
HinP1I GCGC 2 cut(s) 150, 192
HinfI GANTC 3 cut(s) 65, 74, 88
HpaII CCGG 4 cut(s) 132, 180, 201, 279
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 9 cut(s) 25, 64, 79, 93, 98, 156, 161, 177, 343
Hpy188III TCNNGA 2 cut(s) 41, 71
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 5 cut(s) 189, 251, 308, 317, 326
HpyF3I CTNAG 2 cut(s) 90, 340
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 2 cut(s) 150, 192
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 5 cut(s) 93, 156, 233, 257, 281
LmnI GCTCC 1 cut(s) 98
MaeI CTAG 1 cut(s) 114
MalI GATC 5 cut(s) 95, 158, 235, 259, 283
MboI GATC 5 cut(s) 93, 156, 233, 257, 281
MboII GAAGA 2 cut(s) 12, 19
MflI RGATCY 3 cut(s) 233, 257, 281
MhlI GDGCHC 2 cut(s) 103, 313
MlyI GAGTC 2 cut(s) 68, 82
MmeI TCCRAC 3 cut(s) 42, 102, 200
MnlI CCTC 7 cut(s) 45, 76, 183, 227, 249, 273, 304
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 4 cut(s) 132, 180, 201, 279
MspR9I CCNGG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 189, 251, 308, 317, 326
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 132
NdeII GATC 5 cut(s) 93, 156, 233, 257, 281
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 312
NsbI TGCGCA 1 cut(s) 193
NspI RCATGY 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 259
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 247, 328
PleI GAGTC 2 cut(s) 68, 82
PpsI GAGTC 2 cut(s) 68, 82
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 300, 324
PsuI RGATCY 3 cut(s) 233, 257, 281
SatI GCNGC 2 cut(s) 246, 327
Sau3AI GATC 5 cut(s) 93, 156, 233, 257, 281
Sau96I GGNCC 2 cut(s) 300, 324
SchI GAGTC 2 cut(s) 68, 82
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 103, 313
SetI ASST 4 cut(s) 16, 123, 219, 253
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SsiI CCGC 6 cut(s) 183, 204, 243, 246, 270, 327
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 130
TaqI TCGA 1 cut(s) 5
TauI GCSGC 2 cut(s) 248, 329
TfiI GAWTC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 200
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.