Rmu_ssc0000189.1_g000010

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
OG0000290
Physical Location & Seq
Forward (+)
78696 .. 81348
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000010.1.cds

Sequence Viewer

Length: 840 bp
atggcacgtgataaagagcgtgatcgggagttggaggagacaaagaaaatgcttattgaaaaacaagcaaaagcagaaaatctcttaaacaaaaggattgctcaactagaagcactaataacagacaaggcgaactatgcaccccattcccctatatcagataagggcagttttcatgatagagtgaaaaaaaattcccctatattagatgacaaggtgcaagaaaatgtggatgattgtgaaattgttcctccatctactgatgataagggtggcgtatgtgagttagcaatgaacaccatcaccaacatagctgcttttggtaccgtatttgatgatgtggatattaataagatgataaatggagctgcattgaaggggggatgcgttagagtgtcagtggatggtgagattcaaggtgatgcaccacttcctttccctatagcgggtaagatggaattggttcgagaagccattgaaagtcatgtggcttggcctgaggagcttgtaattcggagacagccatcaaagagatcagattttggtttctatttagtgaaccggttgaaagagggtaagactgattgcatattctttatgccctacaatccggtgccggagcggtgtagacggtttcaagactcttggcctccatatttgagacttggaatttacatgagatttcagacaaagggattagagagagagagagagacagagagagagaatatggccggcggcaatccagaccttcttatgcagcttgccagagatatgacggaggcgggccacgccgtcgtggcactcagcttcctcaccgcaactaacatcacagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

279

Amino Acids

31.43

Weight (kDa)

5.46

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 613
AccBSI CCGCTC 1 cut(s) 622
AccI GTMKAC 1 cut(s) 628
AciI CCGC 5 cut(s) 446, 622, 738, 785, 819
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 2 cut(s) 193, 669
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 445, 446
AgeI ACCGGT 1 cut(s) 561
AgsI TTSAA 6 cut(s) 59, 376, 416, 479, 568, 638
AluBI AGCT 5 cut(s) 314, 368, 505, 763, 810
AluI AGCT 5 cut(s) 314, 368, 505, 763, 810
Alw26I GTCTC 4 cut(s) 32, 511, 655, 707
AoxI GGCC 4 cut(s) 494, 647, 732, 787
ApeKI GCWGC 3 cut(s) 314, 368, 760
ApoI RAATTY 2 cut(s) 193, 669
AseI ATTAAT 1 cut(s) 348
AsiGI ACCGGT 1 cut(s) 561
Asp700I GAANNNNTTC 2 cut(s) 246, 462
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 295, 419, 431, 808
AxyI CCTNAGG 1 cut(s) 498
BanI GGYRCC 2 cut(s) 323, 613
BbrPI CACGTG 1 cut(s) 8
BbvI GCAGC 3 cut(s) 301, 355, 772
BccI CCATC 5 cut(s) 262, 308, 398, 448, 532
BceAI ACGGC 1 cut(s) 779
BcoDI GTCTC 4 cut(s) 32, 511, 655, 707
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 800
BisI GCNGC 4 cut(s) 315, 369, 739, 761
BlsI GCNGC 4 cut(s) 316, 370, 740, 762
BmgT120I GGNCC 1 cut(s) 787
BmiI GGNNCC 2 cut(s) 325, 615
BmsI GCATC 2 cut(s) 374, 412
BsaAI YACGTR 1 cut(s) 8
BsaWI WCCGGW 2 cut(s) 561, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 446
Bse118I RCCGGY 2 cut(s) 561, 734
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 297
BseGI GGATG 3 cut(s) 238, 389, 409
BseLI CCNNNNNNNGG 2 cut(s) 445, 446
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 489, 820
BseRI GAGGAG 2 cut(s) 50, 515
BseXI GCAGC 3 cut(s) 301, 355, 772
BshFI GGCC 4 cut(s) 496, 649, 734, 789
BshNI GGYRCC 2 cut(s) 323, 613
BshTI ACCGGT 1 cut(s) 561
BsiSI CCGG 4 cut(s) 562, 611, 617, 735
BslI CCNNNNNNNGG 2 cut(s) 445, 446
BsmAI GTCTC 4 cut(s) 32, 511, 655, 707
BsnI GGCC 4 cut(s) 496, 649, 734, 789
Bsp143I GATC 2 cut(s) 22, 533
BspACI CCGC 5 cut(s) 446, 622, 738, 785, 819
BspANI GGCC 4 cut(s) 496, 649, 734, 789
BspCNI CTCAG 2 cut(s) 490, 819
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 325, 615
BspT107I GGYRCC 2 cut(s) 323, 613
BsrBI CCGCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 561, 734
BssAI RCCGGY 2 cut(s) 561, 734
BssMI GATC 2 cut(s) 22, 533
Bst4CI ACNGT 2 cut(s) 328, 633
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 736, 765, 787
BstDEI CTNAG 2 cut(s) 498, 806
BstF5I GGATG 3 cut(s) 238, 389, 409
BstKTI GATC 2 cut(s) 25, 536
BstMAI GTCTC 4 cut(s) 32, 511, 655, 707
BstMBI GATC 2 cut(s) 22, 533
BstMWI GCNNNNNNNGC 4 cut(s) 137, 502, 791, 800
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 301, 355, 772
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 4 cut(s) 496, 649, 734, 789
BtsCI GGATG 3 cut(s) 238, 389, 409
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 736, 765, 787
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 2 cut(s) 561, 734
Cfr13I GGNCC 1 cut(s) 787
Csp6I GTAC 1 cut(s) 324
CspAI ACCGGT 1 cut(s) 561
CviAII CATG 3 cut(s) 176, 485, 676
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 498, 806
DpnI GATC 2 cut(s) 24, 535
DpnII GATC 2 cut(s) 22, 533
EaeI YGGCCR 1 cut(s) 732
Eco72I CACGTG 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 498
FaeI CATG 3 cut(s) 179, 488, 679
FatI CATG 3 cut(s) 175, 484, 675
FauI CCCGC 2 cut(s) 439, 778
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 315, 369, 739, 761
FokI GGATG 3 cut(s) 245, 396, 416
Fsp4HI GCNGC 4 cut(s) 315, 369, 739, 761
FspBI CTAG 1 cut(s) 107
GluI GCNGC 4 cut(s) 315, 369, 739, 761
HaeIII GGCC 4 cut(s) 496, 649, 734, 789
HapII CCGG 4 cut(s) 562, 611, 617, 735
Hin1II CATG 3 cut(s) 179, 488, 679
HinfI GANTC 2 cut(s) 412, 641
HpaII CCGG 4 cut(s) 562, 611, 617, 735
HphI GGTGA 4 cut(s) 295, 419, 431, 808
Hpy166II GTNNAC 2 cut(s) 559, 629
Hpy188I TCNGA 4 cut(s) 160, 516, 538, 687
Hpy188III TCNNGA 5 cut(s) 26, 176, 467, 638, 746
Hpy8I GTNNAC 2 cut(s) 559, 629
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 2 cut(s) 370, 761
HpyCH4III ACNGT 2 cut(s) 328, 633
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 140, 220, 371, 425, 588, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 502, 791, 800
HpyF3I CTNAG 2 cut(s) 498, 806
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 3 cut(s) 179, 488, 679
KpnI GGTACC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 734
KroNI GCCGGC 1 cut(s) 736
Kzo9I GATC 2 cut(s) 22, 533
LmnI GCTCC 3 cut(s) 365, 502, 619
LpnPI CCDG 7 cut(s) 510, 575, 624, 630, 748, 759, 781
Lsp1109I GCAGC 3 cut(s) 301, 355, 772
LweI GCATC 2 cut(s) 374, 412
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 7
MalI GATC 2 cut(s) 24, 535
MbiI CCGCTC 1 cut(s) 622
MboI GATC 2 cut(s) 22, 533
MluCI AATT 5 cut(s) 193, 243, 458, 510, 669
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 7 cut(s) 28, 261, 493, 565, 660, 775, 824
MroNI GCCGGC 1 cut(s) 734
MroXI GAANNNNTTC 2 cut(s) 246, 462
MseI TTAA 2 cut(s) 86, 348
MspI CCGG 4 cut(s) 562, 611, 617, 735
MwoI GCNNNNNNNGC 4 cut(s) 137, 502, 791, 800
NaeI GCCGGC 1 cut(s) 736
NdeII GATC 2 cut(s) 22, 533
NgoMIV GCCGGC 1 cut(s) 734
NlaIII CATG 3 cut(s) 179, 488, 679
NlaIV GGNNCC 2 cut(s) 325, 615
PagI TCATGA 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 736
PdmI GAANNNNTTC 2 cut(s) 246, 462
PfeI GAWTC 1 cut(s) 412
PinAI ACCGGT 1 cut(s) 561
PkrI GCNGC 4 cut(s) 316, 370, 740, 762
PleI GAGTC 1 cut(s) 635
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
PpsI GAGTC 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 348
PspCI CACGTG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 325, 615
PspPI GGNCC 1 cut(s) 787
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 86, 348
SatI GCNGC 4 cut(s) 315, 369, 739, 761
Sau3AI GATC 2 cut(s) 22, 533
Sau96I GGNCC 1 cut(s) 787
SchI GAGTC 1 cut(s) 635
SetI ASST 9 cut(s) 10, 219, 316, 370, 421, 507, 753, 765, 812
SfaNI GCATC 2 cut(s) 374, 412
SfcI CTRYAG 1 cut(s) 441
Sse9I AATT 5 cut(s) 193, 243, 458, 510, 669
SsiI CCGC 5 cut(s) 446, 622, 738, 785, 819
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 328, 633
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 466
TasI AATT 5 cut(s) 193, 243, 458, 510, 669
TauI GCSGC 1 cut(s) 741
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 86, 348
Tru9I TTAA 2 cut(s) 86, 348
TscAI CASTG 1 cut(s) 405
TseI GCWGC 3 cut(s) 314, 368, 760
TspDTI ATGAA 2 cut(s) 164, 308
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 1 cut(s) 405
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 2 cut(s) 193, 669
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 2 cut(s) 246, 462
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.