RchiOBHm_Chr1g0352301

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000290
Physical Location & Seq
Reverse (-)
45525843 .. 45532643
6801 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57802

Sequence Viewer

Length: 708 bp
ATGGGTTCAAAGAAGACGGGAAAATCAAAAGAACGCAAAGATTCAACAAAAAAAGTGGAGAAGGTTGCTAGTCCAAATGACACTGATGACGTGGTTGATGATAAGGATGACCAAGTATCAGCTGAAACTATGACGACCACTGAATCAGCGAAAGGAAAAACCAGAGGGAAGCGAACTGTGGCTGCAATGTACAAGGTAGTGGTGAAGAAAGCAGTTGGGAAGAAATTTAAAGTTACATACAGCGACACGGGCAATCCAAACGGCAGAACACGGCACACTCTACAGTCATATATAGGCATGTTGGTGCGGACAATGGTTCCCATCAACGTGGACAGCTGGCCTGAGGTGGATCCTGATTTGAAAGCAAATATTTGGACAGATATTCAGGATACATTCAAAGTAGCCCCTGAAAGCAGAAAACTAGTGTTGTCATCAGCTGGCGTGAAATGGAGATACTTCAAGACCACATTAACAAGGAAGTATGTTCTGCCATTCTTGGGAAAGAAGAAAAAATTGAGAAAGCCACCAAAGCAGTACTCCTATGTTGGCCTACAGCCGTGGAAGGAATTTGTAAAACAACGGACTAGTGAGGAATGGCTGAAACTTCATCAAAAACAAAGTGAACGAGTGAGGAAGAGAAAGTACCATCACAGATTATCAAGAAAGGGATACCTTGGATTAGAGGAGGAATTGGTTAGGATATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

235

Amino Acids

27.17

Weight (kDa)

10.07

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AclWI GGATC 2 cut(s) 344, 357
AcsI RAATTY 2 cut(s) 224, 566
AfaI GTAC 3 cut(s) 191, 536, 644
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 5 cut(s) 9, 45, 361, 397, 460
AhlI ACTAGT 2 cut(s) 421, 584
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 3 cut(s) 122, 336, 437
AluI AGCT 3 cut(s) 122, 336, 437
AlwI GGATC 2 cut(s) 344, 357
AoxI GGCC 2 cut(s) 338, 547
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 224, 566
AsuHPI GGTGA 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 342
BamHI GGATCC 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 329, 654
BceAI ACGGC 3 cut(s) 277, 287, 541
BciVI GTATCC 2 cut(s) 382, 662
BcuI ACTAGT 2 cut(s) 421, 584
BfaI CTAG 4 cut(s) 69, 422, 585, 706
BfmI CTRYAG 2 cut(s) 281, 551
BfuI GTATCC 2 cut(s) 382, 662
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 536
BmgBI CACGTC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 318, 351
BpiI GAAGAC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 557, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 557, 673
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 2 cut(s) 340, 549
BslI CCNNNNNNNGG 1 cut(s) 497
BsnI GGCC 2 cut(s) 340, 549
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 307
BspANI GGCC 2 cut(s) 340, 549
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 318, 351
BspPI GGATC 2 cut(s) 344, 357
BsrDI GCAATG 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 557, 673
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 673
Bst4CI ACNGT 2 cut(s) 178, 285
Bst6I CTCTTC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 338, 439
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 249, 529
BstNSI RCATGY 1 cut(s) 301
BstSFI CTRYAG 2 cut(s) 281, 551
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 2 cut(s) 382, 662
BsuRI GGCC 2 cut(s) 340, 549
BtgI CCRYGG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 81, 138
Cac8I GCNNGC 2 cut(s) 338, 439
Csp6I GTAC 3 cut(s) 190, 535, 643
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 298
CviQI GTAC 3 cut(s) 190, 535, 643
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 673
Eco81I CCTNAGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 1 cut(s) 301
FaiI YATR 9 cut(s) 131, 238, 289, 291, 293, 299, 483, 543, 703
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 4 cut(s) 69, 422, 585, 706
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 340, 549
Hin1II CATG 1 cut(s) 301
HinfI GANTC 2 cut(s) 41, 143
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 331, 623
Hpy188III TCNNGA 4 cut(s) 353, 386, 460, 660
Hpy8I GTNNAC 2 cut(s) 331, 623
HpyAV CCTTC 2 cut(s) 55, 556
HpyCH4III ACNGT 2 cut(s) 178, 285
HpyCH4IV ACGT 2 cut(s) 90, 327
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 529
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 90, 327
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 7 cut(s) 175, 322, 354, 366, 371, 420, 423
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 4 cut(s) 69, 422, 585, 706
MaeII ACGT 2 cut(s) 90, 327
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 5 cut(s) 25, 217, 232, 517, 646
MflI RGATCY 1 cut(s) 349
MluCI AATT 4 cut(s) 224, 512, 566, 689
MnlI CCTC 6 cut(s) 158, 337, 583, 624, 676, 679
MseI TTAA 2 cut(s) 228, 470
MslI CAYNNNNRTG 2 cut(s) 302, 326
MspA1I CMGCKG 3 cut(s) 122, 336, 437
MwoI GCNNNNNNNGC 2 cut(s) 249, 529
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 2 cut(s) 318, 351
NspI RCATGY 1 cut(s) 301
PfeI GAWTC 2 cut(s) 41, 143
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 318, 351
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 3 cut(s) 122, 336, 437
RsaI GTAC 3 cut(s) 191, 536, 644
RsaNI GTAC 3 cut(s) 190, 535, 643
RseI CAYNNNNRTG 2 cut(s) 302, 326
SaqAI TTAA 2 cut(s) 228, 470
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 536
SetI ASST 9 cut(s) 66, 93, 124, 198, 330, 338, 348, 439, 675
SfcI CTRYAG 2 cut(s) 281, 551
SmiMI CAYNNNNRTG 2 cut(s) 302, 326
SpeI ACTAGT 2 cut(s) 421, 584
Sse9I AATT 4 cut(s) 224, 512, 566, 689
SsiI CCGC 1 cut(s) 307
SspI AATATT 1 cut(s) 370
SspMI CTAG 4 cut(s) 69, 422, 585, 706
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 2 cut(s) 178, 285
TaiI ACGT 2 cut(s) 93, 330
TasI AATT 4 cut(s) 224, 512, 566, 689
TatI WGTACW 2 cut(s) 189, 534
TfiI GAWTC 2 cut(s) 41, 143
Tru1I TTAA 2 cut(s) 228, 470
Tru9I TTAA 2 cut(s) 228, 470
TscAI CASTG 2 cut(s) 88, 145
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 2 cut(s) 88, 145
XapI RAATTY 2 cut(s) 224, 566
XceI RCATGY 1 cut(s) 301
XspI CTAG 4 cut(s) 69, 422, 585, 706
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.