RchiOBHm_Chr4g0385451

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000290
Physical Location & Seq
Reverse (-)
923542 .. 927424
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35892

Sequence Viewer

Length: 2022 bp
ATGGTGTCCATTAACATAGAAAGCTGGCCCGAAGTCGACCGTGATGAGAAAGACAAACTTTGGATCGACGTTCAGGATACATTCAAAGTGGCCCCTGAAAGTAAGAAAATGGTGTTGGCATCTGCTGGGACTAAATGGAGACAGTTTAAGACTGACTTAACAAATAAACATGTGCTGCCTTACTTGGGAAAGAGGAAGAAATTGAGAAAGCCTCCGAAGGGGTATGAATTCGTTGGGTTATTGCCATGGAGAGAATTTGTAAAACAGAGGAGTACAGAACAATGGCTGAAACTTCATCATGAACAAAGTCAGCGAGTGAAGAAGAGAAAATATCATCACAAATTATCAAGAAAGGGTTATATTGGACTAGAGGAGGAATTGAGAGAGACTTGGCCTGAAGGAAAGGTAATTGATCATGCAGTGTTATGGAAGAAAGCTCGTGTACCTAAAAATGGGAAGATAGATGAGGAGGTGACACCAATAGCATCAAAAATTGATGAATTGCTAGAGAAGAAGAGTAAGGGTGAGCTAGACATTTCAAGAAGTGATGATGTATTGACTCAGGCACTAGAAACTCCTGAACACCCGGGTAGGGTGAGGGGTGTTGGAGGTTTTGTCAATCTAACCACATACTTTAATCTTCCGAAGCAGAGAAGGGTCACAATTACTAAAGCAGAATTATTGGCCCGTGATAGAGAACGAGATAGGGAGTTGCAAGAGACAAAGAAATTGCTTTATGAACAACAAGCAAAGACAGAAGAGCTCTTTAATAAAAGGCTTGCTGAATTAGAAGCACGTTTCTCAGAAAAGACACCCTATGCACCTCCTATGAATGTTGCTGTTTTTGAAAACAATCTGCTGACACAAATATCAGATAAAGGCAGTTTCCATGATGCAGCAAAAAAGAACTCATTTGATCTTAATGATAATGTGAAAGTAAATGTGGACGACTGCAAGATTATTCCTCCCCCTACTGATATGGGTAACACATGTGAGTTAGCAGTGGATACCATCAGCAACATAGTTGCTTTTGGTACCGTATTCGATGACGAGGATATGACAATGACAATACATGGAGTTCCATTGAAGGAGGGATGTCTTAAGGTATCGGTGGATGGTGATATTCAAGGTGACGCACGACTTCCTTTTCCTGTATTAGGTGAGATGGAATTGGTTCGTGAAGCTATTGGAAGTCACGTAGCTTGGCCTGAGGAGCTTGTTATTCGGAAACATCCATCAAAGAACAACAACAAGAAGAAGTGTCCTATTGTGAAATCATTGTTCGATAAAGCTGAGCTACACCCTTTTGTGCCCAAGCGCTGCAAGTTATTGTACAAACATGCCAAAACTATAATGGAAGAGACTAATGAGTCAATAAGCACAGTGTTGGATGATGAAGTCATTGACGTGCCAAAAGAACTCTACATCTTAACTGAGAATGTGACTAATCTCTTAGAAATGAAGTGGATTGGCCAAGGAGTGATAGCAGCATACATGGCGCACCTACATGAAATTATTAGTCAAAGGGATGAGTTGGATACATTCGCTTTTATTGATCTAGCAGCCACATATAAATGTGAAAGACCAGGATTTCATCCATACTTGGTGGACCGGTTGAAAGAGGGGAAGACTGACCGTATATTTTTTATGCCATATAACCCGGGGGAACATTGGATATTGACAATTATTTGGGAGGATGAAATCTACATGTTGGACCCTTTGCCTAAACCAGTCCATTACCAATCATGGGAGAACATAGTGATAAATGCGGTTAAAGCTTTCAACGCTGAAACGGGTAGGGTTAACAAAGTGCCCAAGGTGAAATTTCTTCCGGGCGTACCTAAGCAACCGGGTGGAGTTGAGTGTGGCTATTATGTGATGCGATATATGAAAGATATTATAAATGATGACACTCTTTCATTTTCAACCAAGTGGGCGTCAAAGAGTCGGAACTCATATACCCAAGAGCAACTTGATGAGGTGCGCATTGAAGCGGCTGACTACTTGCAGACTTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

673

Amino Acids

77.61

Weight (kDa)

6.84

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 83 - 206 1.5e-08 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 329 - 408 1e-12 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 547 - 658 4.2e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1901
AasI GACNNNNNNGTC 1 cut(s) 1369
Acc16I TGCGCA 1 cut(s) 1985
Acc65I GGTACC 1 cut(s) 1034
AccB1I GGYRCC 1 cut(s) 1034
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 1769, 1994
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 1471
AcsI RAATTY 3 cut(s) 227, 254, 1823
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 1937
AfaI GTAC 5 cut(s) 274, 444, 1036, 1334, 1839
AfeI AGCGCT 1 cut(s) 1319
AfiI CCNNNNNNNGG 6 cut(s) 185, 218, 452, 592, 1157, 1747
AflII CTTAAG 1 cut(s) 1100
AflIII ACRYGT 3 cut(s) 169, 989, 1707
AgeI ACCGGT 1 cut(s) 1611
AgsI TTSAA 9 cut(s) 85, 540, 848, 1087, 1127, 1618, 1783, 1926, 1991
AjiI CACGTC 1 cut(s) 1408
AjnI CCWGG 1 cut(s) 1585
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 4 cut(s) 133, 380, 713, 1355
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 2 cut(s) 586, 1660
Aor51HI AGCGCT 1 cut(s) 1319
AoxI GGCC 6 cut(s) 26, 90, 392, 684, 1205, 1471
ApeKI GCWGC 5 cut(s) 175, 896, 1320, 1487, 1562
ApoI RAATTY 3 cut(s) 227, 254, 1823
AsiGI ACCGGT 1 cut(s) 1611
Asp700I GAANNNNTTC 1 cut(s) 1173
Asp718I GGTACC 1 cut(s) 1034
AspLEI GCGC 3 cut(s) 1320, 1501, 1986
AspS9I GGNCC 5 cut(s) 27, 91, 685, 1609, 1714
AsuC2I CCSGG 6 cut(s) 587, 588, 1661, 1662, 1833, 1851
AsuHPI GGTGA 7 cut(s) 484, 536, 607, 1130, 1142, 1172, 1831
AvaI CYCGRG 2 cut(s) 586, 1660
AvaII GGWCC 2 cut(s) 1609, 1714
AxyI CCTNAGG 1 cut(s) 1209
BaeGI GKGCMC 2 cut(s) 1314, 1815
BalI TGGCCA 1 cut(s) 1473
BanI GGYRCC 1 cut(s) 1034
BanII GRGCYC 1 cut(s) 765
BauI CACGAG 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 1634
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 5 cut(s) 162, 908, 1307, 1499, 1574
BccI CCATC 4 cut(s) 1019, 1109, 1159, 1243
BciT130I CCWGG 1 cut(s) 1587
BciVI GTATCC 3 cut(s) 70, 1000, 1531
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 6 cut(s) 587, 588, 1661, 1662, 1833, 1851
BcoDI GTCTC 4 cut(s) 133, 380, 713, 1355
BfaI CTAG 5 cut(s) 368, 506, 530, 569, 1559
BfmI CTRYAG 1 cut(s) 2018
BfoI RGCGCY 1 cut(s) 1321
BfrI CTTAAG 1 cut(s) 1100
BfuI GTATCC 3 cut(s) 70, 1000, 1531
BisI GCNGC 6 cut(s) 176, 897, 1321, 1488, 1563, 1995
BlpI GCTNAGC 1 cut(s) 1293
BlsI GCNGC 6 cut(s) 177, 898, 1322, 1489, 1564, 1996
Bme1390I CCNGG 7 cut(s) 587, 588, 1587, 1661, 1662, 1833, 1851
Bme18I GGWCC 2 cut(s) 1609, 1714
BmeT110I CYCGRG 2 cut(s) 586, 1660
BmgBI CACGTC 1 cut(s) 1408
BmgT120I GGNCC 5 cut(s) 27, 91, 685, 1609, 1714
BmiI GGNNCC 3 cut(s) 93, 1036, 1716
BmrFI CCNGG 7 cut(s) 587, 588, 1587, 1661, 1662, 1833, 1851
BmsI GCATC 4 cut(s) 128, 494, 883, 1869
BpiI GAAGAC 1 cut(s) 1634
BplI GAGNNNNNCTC 2 cut(s) 196, 228
Bpu10I CCTNAGC 1 cut(s) 1842
Bpu1102I GCTNAGC 1 cut(s) 1293
BpuMI CCSGG 6 cut(s) 587, 588, 1661, 1662, 1833, 1851
BsaAI YACGTR 1 cut(s) 1198
BsaHI GRCGYC 1 cut(s) 1937
BsaJI CCNNGG 6 cut(s) 245, 586, 1474, 1660, 1661, 1815
BsaWI WCCGGW 1 cut(s) 1611
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 6 cut(s) 185, 218, 452, 592, 1157, 1747
Bse118I RCCGGY 1 cut(s) 1611
Bse1I ACTGG 1 cut(s) 1730
Bse21I CCTNAGG 1 cut(s) 1209
BseBI CCWGG 1 cut(s) 1587
BseDI CCNNGG 6 cut(s) 245, 586, 1474, 1660, 1661, 1815
BseGI GGATG 7 cut(s) 1100, 1120, 1231, 1396, 1534, 1594, 1702
BseLI CCNNNNNNNGG 6 cut(s) 185, 218, 452, 592, 1157, 1747
BseMII CTCAG 5 cut(s) 575, 816, 1200, 1284, 1425
BseNI ACTGG 1 cut(s) 1730
BseRI GAGGAG 4 cut(s) 283, 386, 482, 1226
BseSI GKGCMC 2 cut(s) 1314, 1815
BseXI GCAGC 5 cut(s) 162, 908, 1307, 1499, 1574
BseYI CCCAGC 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 6 cut(s) 28, 92, 394, 686, 1207, 1473
BshNI GGYRCC 1 cut(s) 1034
BshTI ACCGGT 1 cut(s) 1611
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 765
BsiHKCI CYCGRG 2 cut(s) 586, 1660
BsiSI CCGG 5 cut(s) 587, 1612, 1661, 1832, 1850
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 6 cut(s) 185, 218, 452, 592, 1157, 1747
BsmAI GTCTC 4 cut(s) 133, 380, 713, 1355
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 6 cut(s) 28, 92, 394, 686, 1207, 1473
BsoBI CYCGRG 2 cut(s) 586, 1660
Bsp1286I GDGCHC 3 cut(s) 765, 1314, 1815
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 4 cut(s) 63, 412, 916, 1555
Bsp1720I GCTNAGC 1 cut(s) 1293
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 1769, 1994
BspANI GGCC 6 cut(s) 28, 92, 394, 686, 1207, 1473
BspCNI CTCAG 5 cut(s) 574, 815, 1201, 1285, 1426
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 3 cut(s) 93, 1036, 1716
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 1034
BspTI CTTAAG 1 cut(s) 1100
BsrFI RCCGGY 1 cut(s) 1611
BsrGI TGTACA 1 cut(s) 1332
BsrI ACTGG 1 cut(s) 1730
BssAI RCCGGY 1 cut(s) 1611
BssECI CCNNGG 6 cut(s) 245, 586, 1474, 1660, 1661, 1815
BssMI GATC 4 cut(s) 63, 412, 916, 1555
BssNI GRCGYC 1 cut(s) 1937
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 3 cut(s) 245, 1474, 1815
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 1587
Bst4CI ACNGT 5 cut(s) 41, 144, 1039, 1384, 1637
Bst6I CTCTTC 4 cut(s) 317, 509, 753, 1353
BstACI GRCGYC 1 cut(s) 1937
BstAFI CTTAAG 1 cut(s) 1100
BstAPI GCANNNNNTGC 1 cut(s) 2014
BstAUI TGTACA 1 cut(s) 1332
BstBAI YACGTR 1 cut(s) 1198
BstC8I GCNNGC 2 cut(s) 26, 780
BstDEI CTNAG 7 cut(s) 561, 802, 1209, 1293, 1434, 1453, 1842
BstDSI CCRYGG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 1155
BstF5I GGATG 7 cut(s) 1100, 1120, 1231, 1396, 1534, 1594, 1702
BstH2I RGCGCY 1 cut(s) 1321
BstHHI GCGC 3 cut(s) 1320, 1501, 1986
BstKTI GATC 4 cut(s) 66, 415, 919, 1558
BstMAI GTCTC 4 cut(s) 133, 380, 713, 1355
BstMBI GATC 4 cut(s) 63, 412, 916, 1555
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 5 cut(s) 1213, 1496, 1775, 1784, 2014
BstNI CCWGG 1 cut(s) 1587
BstNSI RCATGY 4 cut(s) 173, 993, 1343, 1711
BstSCI CCNGG 7 cut(s) 585, 586, 1585, 1659, 1660, 1831, 1849
BstSFI CTRYAG 1 cut(s) 2018
BstSLI GKGCMC 2 cut(s) 1314, 1815
BstV1I GCAGC 5 cut(s) 162, 908, 1307, 1499, 1574
BstV2I GAAGAC 1 cut(s) 1634
Bsu36I CCTNAGG 1 cut(s) 1209
BsuI GTATCC 3 cut(s) 70, 1000, 1531
BsuRI GGCC 6 cut(s) 28, 92, 394, 686, 1207, 1473
BtgI CCRYGG 1 cut(s) 245
BtrI CACGTC 1 cut(s) 1408
BtsCI GGATG 7 cut(s) 1100, 1120, 1231, 1396, 1534, 1594, 1702
BtsI GCAGTG 2 cut(s) 426, 1008
BtsIMutI CAGTG 3 cut(s) 426, 1008, 1389
Cac8I GCNNGC 2 cut(s) 26, 780
CciI TCATGA 1 cut(s) 298
CfoI GCGC 3 cut(s) 1320, 1501, 1986
Cfr10I RCCGGY 1 cut(s) 1611
Cfr13I GGNCC 5 cut(s) 27, 91, 685, 1609, 1714
Cfr9I CCCGGG 2 cut(s) 586, 1660
CseI GACGC 2 cut(s) 1142, 1926
Csp6I GTAC 5 cut(s) 273, 443, 1035, 1333, 1838
CspAI ACCGGT 1 cut(s) 1611
CviQI GTAC 5 cut(s) 273, 443, 1035, 1333, 1838
DdeI CTNAG 7 cut(s) 561, 802, 1209, 1293, 1434, 1453, 1842
DpnI GATC 4 cut(s) 65, 414, 918, 1557
DpnII GATC 4 cut(s) 63, 412, 916, 1555
DrdI GACNNNNNNGTC 1 cut(s) 1369
DseDI GACNNNNNNGTC 1 cut(s) 1369
EaeI YGGCCR 1 cut(s) 1471
Eam1104I CTCTTC 4 cut(s) 317, 509, 753, 1353
EarI CTCTTC 4 cut(s) 317, 509, 753, 1353
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 3 cut(s) 245, 1474, 1815
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 1609, 1714
Eco47III AGCGCT 1 cut(s) 1319
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 1209
Eco88I CYCGRG 2 cut(s) 586, 1660
EcoICRI GAGCTC 1 cut(s) 763
EcoNI CCTNNNNNAGG 1 cut(s) 1155
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 1585
EcoT14I CCWWGG 3 cut(s) 245, 1474, 1815
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 3 cut(s) 245, 1474, 1815
FalI AAGNNNNNCTT 6 cut(s) 42, 74, 140, 172, 1956, 1988
FaqI GGGAC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 176, 897, 1321, 1488, 1563, 1995
FokI GGATG 7 cut(s) 1107, 1127, 1218, 1403, 1541, 1581, 1709
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 6 cut(s) 176, 897, 1321, 1488, 1563, 1995
FspAI RTGCGCAY 1 cut(s) 1985
FspBI CTAG 5 cut(s) 368, 506, 530, 569, 1559
FspI TGCGCA 1 cut(s) 1985
GlaI GCGC 3 cut(s) 1319, 1500, 1985
GluI GCNGC 6 cut(s) 176, 897, 1321, 1488, 1563, 1995
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 1321
HaeIII GGCC 6 cut(s) 28, 92, 394, 686, 1207, 1473
HapII CCGG 5 cut(s) 587, 1612, 1661, 1832, 1850
HgaI GACGC 2 cut(s) 1142, 1926
HhaI GCGC 3 cut(s) 1320, 1501, 1986
Hin1I GRCGYC 1 cut(s) 1937
Hin6I GCGC 3 cut(s) 1318, 1499, 1984
HinP1I GCGC 3 cut(s) 1318, 1499, 1984
HincII GTYRAC 2 cut(s) 37, 1804
HindII GTYRAC 2 cut(s) 37, 1804
HindIII AAGCTT 1 cut(s) 1776
HinfI GANTC 3 cut(s) 559, 1370, 1945
HpaI GTTAAC 1 cut(s) 1804
HpaII CCGG 5 cut(s) 587, 1612, 1661, 1832, 1850
HphI GGTGA 7 cut(s) 484, 536, 607, 1130, 1142, 1172, 1831
Hpy166II GTNNAC 5 cut(s) 37, 443, 946, 1609, 1804
Hpy188I TCNGA 6 cut(s) 216, 645, 805, 874, 1227, 1950
Hpy188III TCNNGA 6 cut(s) 74, 299, 348, 540, 578, 1178
Hpy8I GTNNAC 5 cut(s) 37, 443, 946, 1609, 1804
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 211, 392, 648, 1081
HpyCH4III ACNGT 5 cut(s) 41, 144, 1039, 1384, 1637
HpyCH4IV ACGT 4 cut(s) 69, 796, 1197, 1407
HpyCH4V TGCA 7 cut(s) 419, 715, 821, 896, 954, 1323, 2008
HpyF10VI GCNNNNNNNGC 5 cut(s) 1213, 1496, 1775, 1784, 2014
HpyF3I CTNAG 7 cut(s) 561, 802, 1209, 1293, 1434, 1453, 1842
HpySE526I ACGT 4 cut(s) 69, 796, 1197, 1407
Hsp92I GRCGYC 1 cut(s) 1937
HspAI GCGC 3 cut(s) 1318, 1499, 1984
KpnI GGTACC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 412
KspAI GTTAAC 1 cut(s) 1804
Kzo9I GATC 4 cut(s) 63, 412, 916, 1555
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 1 cut(s) 1213
Lsp1109I GCAGC 5 cut(s) 162, 908, 1307, 1499, 1574
LweI GCATC 4 cut(s) 128, 494, 883, 1869
MaeI CTAG 5 cut(s) 368, 506, 530, 569, 1559
MaeII ACGT 4 cut(s) 69, 796, 1197, 1407
MaeIII GTNAC 6 cut(s) 472, 658, 983, 1130, 1193, 1441
MalI GATC 4 cut(s) 65, 414, 918, 1557
MboI GATC 4 cut(s) 63, 412, 916, 1555
MhlI GDGCHC 3 cut(s) 765, 1314, 1815
MlsI TGGCCA 1 cut(s) 1473
MluNI TGGCCA 1 cut(s) 1473
MlyI GAGTC 3 cut(s) 553, 1379, 1954
MmeI TCCRAC 5 cut(s) 586, 1368, 1515, 1692, 1928
Mox20I TGGCCA 1 cut(s) 1473
MroXI GAANNNNTTC 1 cut(s) 1173
MscI TGGCCA 1 cut(s) 1473
MslI CAYNNNNRTG 3 cut(s) 1406, 1506, 1573
Msp20I TGGCCA 1 cut(s) 1473
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 5 cut(s) 587, 1612, 1661, 1832, 1850
MspR9I CCNGG 7 cut(s) 587, 588, 1587, 1661, 1662, 1833, 1851
MvaI CCWGG 1 cut(s) 1587
MwoI GCNNNNNNNGC 5 cut(s) 1213, 1496, 1775, 1784, 2014
NciI CCSGG 6 cut(s) 587, 588, 1661, 1662, 1833, 1851
NcoI CCATGG 1 cut(s) 245
NdeII GATC 4 cut(s) 63, 412, 916, 1555
NlaIV GGNNCC 3 cut(s) 93, 1036, 1716
NmuCI GTSAC 5 cut(s) 472, 658, 1130, 1193, 1441
NsbI TGCGCA 1 cut(s) 1985
NspI RCATGY 4 cut(s) 173, 993, 1343, 1711
PagI TCATGA 1 cut(s) 298
PciI ACATGT 3 cut(s) 169, 989, 1707
PciSI GCTCTTC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 1173
PinAI ACCGGT 1 cut(s) 1611
PkrI GCNGC 6 cut(s) 177, 898, 1322, 1489, 1564, 1996
PleI GAGTC 3 cut(s) 553, 1378, 1953
PpsI GAGTC 3 cut(s) 553, 1378, 1953
Ppu21I YACGTR 1 cut(s) 1198
PscI ACATGT 3 cut(s) 169, 989, 1707
PsiI TTATAA 1 cut(s) 1901
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 1585
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 1585
PspN4I GGNNCC 3 cut(s) 93, 1036, 1716
PspPI GGNCC 5 cut(s) 27, 91, 685, 1609, 1714
RsaI GTAC 5 cut(s) 274, 444, 1036, 1334, 1839
RsaNI GTAC 5 cut(s) 273, 443, 1035, 1333, 1838
RseI CAYNNNNRTG 3 cut(s) 1406, 1506, 1573
SacI GAGCTC 1 cut(s) 765
SalI GTCGAC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 753
SatI GCNGC 6 cut(s) 176, 897, 1321, 1488, 1563, 1995
Sau3AI GATC 4 cut(s) 63, 412, 916, 1555
Sau96I GGNCC 5 cut(s) 27, 91, 685, 1609, 1714
SchI GAGTC 3 cut(s) 553, 1379, 1954
ScrFI CCNGG 7 cut(s) 587, 588, 1587, 1661, 1662, 1833, 1851
SduI GDGCHC 3 cut(s) 765, 1314, 1815
SfaNI GCATC 4 cut(s) 128, 494, 883, 1869
SfcI CTRYAG 1 cut(s) 2018
SinI GGWCC 2 cut(s) 1609, 1714
SmaI CCCGGG 2 cut(s) 588, 1662
SmiMI CAYNNNNRTG 3 cut(s) 1406, 1506, 1573
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
SsiI CCGC 2 cut(s) 1769, 1994
SspMI CTAG 5 cut(s) 368, 506, 530, 569, 1559
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 7 cut(s) 585, 586, 1585, 1659, 1660, 1831, 1849
StyI CCWWGG 3 cut(s) 245, 1474, 1815
TaaI ACNGT 5 cut(s) 41, 144, 1039, 1384, 1637
TaiI ACGT 4 cut(s) 72, 799, 1200, 1410
TaqI TCGA 4 cut(s) 36, 66, 1044, 1284
TatI WGTACW 2 cut(s) 272, 1332
TauI GCSGC 1 cut(s) 1997
TscAI CASTG 3 cut(s) 426, 1008, 1389
TseFI GTSAC 5 cut(s) 472, 658, 1130, 1193, 1441
TseI GCWGC 5 cut(s) 175, 896, 1320, 1487, 1562
Tsp45I GTSAC 5 cut(s) 472, 658, 1130, 1193, 1441
TspMI CCCGGG 2 cut(s) 586, 1660
TspRI CASTG 3 cut(s) 426, 1008, 1389
Vha464I CTTAAG 1 cut(s) 1100
VpaK11BI GGWCC 2 cut(s) 1609, 1714
XagI CCTNNNNNAGG 1 cut(s) 1155
XapI RAATTY 3 cut(s) 227, 254, 1823
XceI RCATGY 4 cut(s) 173, 993, 1343, 1711
XcmI CCANNNNNNNNNTGG 1 cut(s) 1351
XmaI CCCGGG 2 cut(s) 586, 1660
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 5 cut(s) 368, 506, 530, 569, 1559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.