RchiOBHm_Chr7g0196691

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000290
Physical Location & Seq
Forward (+)
14657552 .. 14668819
11268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17594

Sequence Viewer

Length: 2328 bp
ATGGGTTCCAAGAAGGGAATTCGAAAATCACCAAGAGGCAAAAAATTAAAGAGAAAAGCTGATCTGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGAAGAATTTGTATCAGCCAACACTATCACGAGCACCGAATCAGTCAAAACCAGAGGGAAGCGTAATGTGGTAGCACTGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTATCATACACCGAGACGGGCAATCCAAATGGAAGAATCAGACACACTCTGCAGTCTTACATAGGAATGTTGGCGCGGACCAAGGTGCCCATCAATATTGTAAGCTGGCCCGAAGTGGATGGTGACTTGAAGGATAAACTTTGGCTCGATGTTCAGGAAACATTCAAGGTAGCCCCTGAAAGCAAGAAACTGGTATTGACATCTGCTGGCACTAAATGGAGAGCATTCAAGACCATGTTAACACGAAAATATGTGCTCCCATACTTGGGAAAGAAGAAGAAGTTGAGAAAGCCACCGAGTCAATATAATTTTGTTGGGAGGGAGCCATGGAAGGATTTTGTAAAAGAGAGGACTACCGAAAAATTTCTGCAACTTCATAATGAACAAAGTGAACGAGTTAAGAAGAGAAAATATCATCATCGATTATCAAGAAAAGGATATATTGGACTAGAGGAGGAGCTGAGAAAGACGTTGCCCGAAGGAGAGGTCATTGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGAAAAGATGGGGACATAGATGAGGAGGCTAGAGGTGTGGCCACAAAGATAGATGATTTGTTGGAAAAGAAAAGTAAGGGTGAGCTTGAGATCTCAGGGAGTAGTGATGTTCTTTCTCAAGCATTAGAAACTCCTGAACATTCGGGTAGAGTGAGAGGCGTTGGAGGCTTTGTCAATCCCTCAACCTACTTTAAGATGCCGAAGCAGAAAAGGATTAGAATTACCAAGGCAGAATTACTAGCACGTGATAGAGAGCGTGATCGTGAATTGGAAGAGACAAAGAAAATGCTCGCTGCACAACAAGCAAGGACAGAAGAGCGTTTACATAAAAAGATTGCTCAATTAGAAGCACTAATAACAGGGAAGACACCTTACACTTCACCTTTGAATGTTCATGTTGTAGGAGAGAATACAATTTCTCCTATATCGGATAAAGGGAGTTTCCAAGATATAAGAAGAAATACCTCCAATATTCTTGATGAACCGAAGGTGAAACAAGAGGTTGACGACTGCGAGGTTGTTCCTCCCCCTACTGAAATGGGTGGCACATGTGAGTTAGCAGTGGACACCATTAGCAACATAGTTGCTTTTGGTACTGTTTTTGATGAAGAGGATGTCAGTAGGGTGATACATGGAGTTCCAATGAAGGAGGGGTGTGTTAGGGTGTCTGTGGATGGTGCCATTCAAGAGGAAGCACGACTTCCTTTCCCAGTGGGTGATGAGATGGAATTGGTTGGCCAAGCTGTTGGAAGTCATGTGGCTTGGCCTGAAGAGCTTGTTATTCGAAGAGTGAATAAGAAAAAGAAAAGAAAGATGGATTTTGTCAAACAACTGTTTGACAAAGCTGAGCTAAACCCGTTTGTGCCCAAGCGTTGTAAGTTGTTGTACAAGCATGCCAAGACTATTATGAGCCAAACCAATGAGTCGATAAGGACAATGTTGGATGATAGTGTCTTTGGGGTACAGAAACAGCTCTTCATATTGACTGAGAATGTCATTGATCTCTTAGAAATGAATAAGATTGGCCAAGGAGTGATAGCAGCATATATGGCGAACCTACATGAGACTCTCCGTGAGAGAGATGAGTTGGATACTTTTGGCTTCATTGATCCGGCAGCCACATATATGTGTGAGAGATCGGAATTTGTCCCTTACTTGGTGAATCGGTTGAAAGAGGGTAAGGGTGATCGTATATTTTTAATGGCCTACAATCCGGGGGAACATTGGATATTGACAATCATTTGGGAAGATGAGATTTATATCGTCGACCCTTTGCCAAAACCAGTGCATTACAAACCATGGGAAAATGCAGTGATAAATGCAGTTAAAACTTACAATGCTGAAAAGGGGAGGGTTACCAAAGTGCCTAAGTTAAAATTACTTCCGGGCGCACCTAAGCAGCCGGGTGGAGTTGAGTGTGGTTATTATGTTATGCGGTACATGAAGGATATTATTAATGATGACACGCTTTCGTTTTCAACCAAGTGGGCGGTAAAGGATCGGAAAGGGTATACCCAACAACAACTTGACGAGGTCCGCATTGAAGTAGCCGACTACTTACAGACTCTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

775

Amino Acids

88.64

Weight (kDa)

9.3

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 186 - 311 6.7e-12 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 433 - 512 2.7e-14 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 313, 1430
AccI GTMKAC 2 cut(s) 2019, 2264
AccII CGCG 1 cut(s) 304
AciI CCGC 4 cut(s) 304, 2188, 2243, 2290
AclWI GGATC 2 cut(s) 1856, 2259
AcoI YGGCCR 3 cut(s) 792, 1489, 1777
AcsI RAATTY 4 cut(s) 18, 113, 590, 1895
AcuI CTGAAG 1 cut(s) 1542
AcvI CACGTG 1 cut(s) 998
AfaI GTAC 5 cut(s) 188, 1348, 1640, 1716, 2192
AfiI CCNNNNNNNGG 3 cut(s) 493, 494, 1909
AflIII ACRYGT 1 cut(s) 1301
AgsI TTSAA 9 cut(s) 101, 358, 394, 457, 1141, 1439, 1924, 2232, 2297
Alw21I GWGCWC 2 cut(s) 143, 486
Alw26I GTCTC 5 cut(s) 62, 77, 236, 1022, 1811
AlwI GGATC 2 cut(s) 1856, 2259
AlwNI CAGNNNCTG 1 cut(s) 2320
AoxI GGCC 6 cut(s) 335, 792, 1489, 1517, 1777, 1956
ApeKI GCWGC 4 cut(s) 1046, 1793, 1868, 2152
ApoI RAATTY 4 cut(s) 18, 113, 590, 1895
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
AseI ATTAAT 1 cut(s) 2208
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 2 cut(s) 304, 2144
AspS9I GGNCC 3 cut(s) 306, 336, 2287
AsuC2I CCSGG 3 cut(s) 1968, 2139, 2157
AsuHPI GGTGA 9 cut(s) 21, 362, 845, 1125, 1255, 1390, 1481, 1924, 1949
AsuII TTCGAA 2 cut(s) 22, 1537
AvaII GGWCC 2 cut(s) 306, 2287
BaeGI GKGCMC 2 cut(s) 318, 1620
BalI TGGCCA 3 cut(s) 794, 1491, 1779
BanI GGYRCC 2 cut(s) 313, 1430
BarI GAAGNNNNNNTAC 4 cut(s) 1059, 1091, 1109, 1141
BauI CACGAG 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 2 cut(s) 143, 486
BbvI GCAGC 4 cut(s) 1033, 1805, 1880, 2164
BccI CCATC 6 cut(s) 326, 341, 755, 1421, 1471, 1561
BciVI GTATCC 1 cut(s) 1837
BcnI CCSGG 3 cut(s) 1968, 2139, 2157
BcoDI GTCTC 5 cut(s) 62, 77, 236, 1022, 1811
BfaI CTAG 3 cut(s) 677, 783, 992
BfmI CTRYAG 2 cut(s) 278, 2324
BfuI GTATCC 1 cut(s) 1837
BglII AGATCT 1 cut(s) 843
BisI GCNGC 4 cut(s) 1047, 1794, 1869, 2153
BlpI GCTNAGC 1 cut(s) 1599
BlsI GCNGC 4 cut(s) 1048, 1795, 1870, 2154
Bme1390I CCNGG 3 cut(s) 1968, 2139, 2157
Bme18I GGWCC 2 cut(s) 306, 2287
BmgT120I GGNCC 3 cut(s) 306, 336, 2287
BmiI GGNNCC 4 cut(s) 7, 315, 552, 1432
BmrFI CCNGG 3 cut(s) 1968, 2139, 2157
BmrI ACTGGG 1 cut(s) 1457
BmsI GCATC 1 cut(s) 939
BmuI ACTGGG 1 cut(s) 1457
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 2148
Bpu1102I GCTNAGC 1 cut(s) 1599
Bpu14I TTCGAA 2 cut(s) 22, 1537
BpuEI CTTGAG 2 cut(s) 855, 860
BpuMI CCSGG 3 cut(s) 1968, 2139, 2157
Bsa29I ATCGAT 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 2012
BsaJI CCNNGG 6 cut(s) 309, 554, 978, 1780, 1967, 2051
BsaXI ACNNNNNCTCC 4 cut(s) 909, 939, 1156, 1186
Bsc4I CCNNNNNNNGG 3 cut(s) 493, 494, 1909
Bse1I ACTGG 3 cut(s) 423, 1463, 2036
Bse8I GATNNNNATC 1 cut(s) 2012
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 6 cut(s) 309, 554, 978, 1780, 1967, 2051
BseGI GGATG 4 cut(s) 352, 1372, 1432, 1702
BseJI GATNNNNATC 1 cut(s) 2012
BseLI CCNNNNNNNGG 3 cut(s) 493, 494, 1909
BseMII CTCAG 5 cut(s) 72, 680, 861, 1590, 1731
BseNI ACTGG 3 cut(s) 423, 1463, 2036
BseRI GAGGAG 3 cut(s) 695, 698, 791
BseSI GKGCMC 2 cut(s) 318, 1620
BseXI GCAGC 4 cut(s) 1033, 1805, 1880, 2164
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 6 cut(s) 337, 794, 1491, 1519, 1779, 1958
BshNI GGYRCC 2 cut(s) 313, 1430
BshVI ATCGAT 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 143, 486
BsiSI CCGG 4 cut(s) 1865, 1967, 2138, 2156
BslFI GGGAC 2 cut(s) 779, 1886
BslI CCNNNNNNNGG 3 cut(s) 493, 494, 1909
BsmAI GTCTC 5 cut(s) 62, 77, 236, 1022, 1811
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 779, 1886
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 6 cut(s) 337, 794, 1491, 1519, 1779, 1958
Bsp119I TTCGAA 2 cut(s) 22, 1537
Bsp1286I GDGCHC 4 cut(s) 143, 318, 486, 1620
Bsp1407I TGTACA 2 cut(s) 186, 1638
Bsp143I GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
Bsp1720I GCTNAGC 1 cut(s) 1599
Bsp19I CCATGG 2 cut(s) 554, 2051
BspACI CCGC 4 cut(s) 304, 2188, 2243, 2290
BspANI GGCC 6 cut(s) 337, 794, 1491, 1519, 1779, 1958
BspCNI CTCAG 5 cut(s) 73, 681, 860, 1591, 1732
BspDI ATCGAT 1 cut(s) 649
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 4 cut(s) 7, 315, 552, 1432
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 2 cut(s) 1856, 2259
BspQI GCTCTTC 3 cut(s) 1062, 1518, 1733
BspT104I TTCGAA 2 cut(s) 22, 1537
BspT107I GGYRCC 2 cut(s) 313, 1430
BsrGI TGTACA 2 cut(s) 186, 1638
BsrI ACTGG 3 cut(s) 423, 1463, 2036
BssECI CCNNGG 6 cut(s) 309, 554, 978, 1780, 1967, 2051
BssMI GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
BssNAI GTATAC 1 cut(s) 2265
BssSI CACGAG 1 cut(s) 136
BssT1I CCWWGG 5 cut(s) 309, 554, 978, 1780, 2051
Bst1107I GTATAC 1 cut(s) 2265
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 186, 1351, 1587
Bst6I CTCTTC 7 cut(s) 626, 1020, 1062, 1356, 1518, 1534, 1733
BstAUI TGTACA 2 cut(s) 186, 1638
BstBAI YACGTR 1 cut(s) 998
BstBI TTCGAA 2 cut(s) 22, 1537
BstC8I GCNNGC 4 cut(s) 335, 436, 1044, 1647
BstDEI CTNAG 8 cut(s) 81, 689, 847, 1599, 1740, 1759, 2121, 2148
BstDSI CCRYGG 2 cut(s) 554, 2051
BstEII GGTNACC 1 cut(s) 2107
BstF5I GGATG 4 cut(s) 352, 1372, 1432, 1702
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 2 cut(s) 304, 2144
BstKTI GATC 9 cut(s) 64, 724, 846, 1015, 1756, 1864, 1892, 1942, 2254
BstMAI GTCTC 5 cut(s) 62, 77, 236, 1022, 1811
BstMBI GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
BstMWI GCNNNNNNNGC 4 cut(s) 918, 1055, 1525, 1802
BstNSI RCATGY 2 cut(s) 1305, 1649
BstPI GGTNACC 1 cut(s) 2107
BstSCI CCNGG 3 cut(s) 1966, 2137, 2155
BstSFI CTRYAG 2 cut(s) 278, 2324
BstSLI GKGCMC 2 cut(s) 318, 1620
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 1033, 1805, 1880, 2164
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 1 cut(s) 843
BstXI CCANNNNNNTGG 1 cut(s) 1499
BstYI RGATCY 1 cut(s) 843
BstZ17I GTATAC 1 cut(s) 2265
Bsu15I ATCGAT 1 cut(s) 649
BsuI GTATCC 1 cut(s) 1837
BsuRI GGCC 6 cut(s) 337, 794, 1491, 1519, 1779, 1958
BsuTUI ATCGAT 1 cut(s) 649
BtgI CCRYGG 2 cut(s) 554, 2051
BtsCI GGATG 4 cut(s) 352, 1372, 1432, 1702
BtsI GCAGTG 2 cut(s) 1320, 2070
BtsIMutI CAGTG 5 cut(s) 182, 1320, 1470, 2043, 2070
Cac8I GCNNGC 4 cut(s) 335, 436, 1044, 1647
CaiI CAGNNNCTG 1 cut(s) 2320
CfoI GCGC 2 cut(s) 304, 2144
Cfr13I GGNCC 3 cut(s) 306, 336, 2287
ClaI ATCGAT 1 cut(s) 649
Csp6I GTAC 5 cut(s) 187, 1347, 1639, 1715, 2191
CviQI GTAC 5 cut(s) 187, 1347, 1639, 1715, 2191
DdeI CTNAG 8 cut(s) 81, 689, 847, 1599, 1740, 1759, 2121, 2148
DpnI GATC 9 cut(s) 63, 723, 845, 1014, 1755, 1863, 1891, 1941, 2253
DpnII GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 3 cut(s) 792, 1489, 1777
Eam1104I CTCTTC 7 cut(s) 626, 1020, 1062, 1356, 1518, 1534, 1733
EarI CTCTTC 7 cut(s) 626, 1020, 1062, 1356, 1518, 1534, 1733
Eco130I CCWWGG 5 cut(s) 309, 554, 978, 1780, 2051
Eco47I GGWCC 2 cut(s) 306, 2287
Eco57I CTGAAG 1 cut(s) 1542
Eco72I CACGTG 1 cut(s) 998
Eco91I GGTNACC 1 cut(s) 2107
EcoO65I GGTNACC 1 cut(s) 2107
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 5 cut(s) 309, 554, 978, 1780, 2051
ErhI CCWWGG 5 cut(s) 309, 554, 978, 1780, 2051
Esp3I CGTCTC 1 cut(s) 236
FalI AAGNNNNNCTT 2 cut(s) 1437, 1469
FaqI GGGAC 2 cut(s) 779, 1886
FblI GTMKAC 2 cut(s) 2019, 2264
Fnu4HI GCNGC 4 cut(s) 1047, 1794, 1869, 2153
FokI GGATG 4 cut(s) 359, 1379, 1439, 1709
Fsp4HI GCNGC 4 cut(s) 1047, 1794, 1869, 2153
FspBI CTAG 3 cut(s) 677, 783, 992
GlaI GCGC 2 cut(s) 303, 2143
GluI GCNGC 4 cut(s) 1047, 1794, 1869, 2153
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 6 cut(s) 337, 794, 1491, 1519, 1779, 1958
HapII CCGG 4 cut(s) 1865, 1967, 2138, 2156
HhaI GCGC 2 cut(s) 304, 2144
Hin6I GCGC 2 cut(s) 302, 2142
HinP1I GCGC 2 cut(s) 302, 2142
HincII GTYRAC 4 cut(s) 468, 752, 1258, 2020
HindII GTYRAC 4 cut(s) 468, 752, 1258, 2020
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 7 cut(s) 146, 264, 526, 1676, 1819, 1915, 2317
HpaI GTTAAC 1 cut(s) 468
HpaII CCGG 4 cut(s) 1865, 1967, 2138, 2156
HphI GGTGA 9 cut(s) 21, 362, 845, 1125, 1255, 1390, 1481, 1924, 1949
Hpy166II GTNNAC 8 cut(s) 468, 620, 752, 1076, 1258, 1318, 2020, 2265
Hpy188I TCNGA 4 cut(s) 269, 1183, 1894, 2256
Hpy8I GTNNAC 8 cut(s) 468, 620, 752, 1076, 1258, 1318, 2020, 2265
Hpy99I CGWCG 1 cut(s) 2021
HpyAV CCTTC 7 cut(s) 7, 352, 553, 701, 1234, 1393, 2191
HpyCH4III ACNGT 3 cut(s) 186, 1351, 1587
HpyCH4IV ACGT 2 cut(s) 698, 997
HpyCH4V TGCA 7 cut(s) 280, 598, 728, 1049, 2041, 2063, 2075
HpyF10VI GCNNNNNNNGC 4 cut(s) 918, 1055, 1525, 1802
HpyF3I CTNAG 8 cut(s) 81, 689, 847, 1599, 1740, 1759, 2121, 2148
HpySE526I ACGT 2 cut(s) 698, 997
HspAI GCGC 2 cut(s) 302, 2142
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
LguI GCTCTTC 3 cut(s) 1062, 1518, 1733
LmnI GCTCC 3 cut(s) 489, 550, 685
Lsp1109I GCAGC 4 cut(s) 1033, 1805, 1880, 2164
LweI GCATC 1 cut(s) 939
MaeI CTAG 3 cut(s) 677, 783, 992
MaeII ACGT 2 cut(s) 698, 997
MaeIII GTNAC 2 cut(s) 350, 2107
MalI GATC 9 cut(s) 63, 723, 845, 1014, 1755, 1863, 1891, 1941, 2253
MboI GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
MflI RGATCY 1 cut(s) 843
MhlI GDGCHC 4 cut(s) 143, 318, 486, 1620
MlsI TGGCCA 3 cut(s) 794, 1491, 1779
MluNI TGGCCA 3 cut(s) 794, 1491, 1779
MlyI GAGTC 4 cut(s) 535, 1685, 1813, 2311
MmeI TCCRAC 5 cut(s) 795, 895, 1480, 1674, 1821
Mox20I TGGCCA 3 cut(s) 794, 1491, 1779
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 3 cut(s) 794, 1491, 1779
MseI TTAA 9 cut(s) 47, 225, 467, 627, 945, 1952, 2079, 2126, 2208
MslI CAYNNNNRTG 3 cut(s) 293, 1877, 1879
Msp20I TGGCCA 3 cut(s) 794, 1491, 1779
MspI CCGG 4 cut(s) 1865, 1967, 2138, 2156
MspR9I CCNGG 3 cut(s) 1968, 2139, 2157
Mva1269I GAATGC 1 cut(s) 452
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 918, 1055, 1525, 1802
NciI CCSGG 3 cut(s) 1968, 2139, 2157
NcoI CCATGG 2 cut(s) 554, 2051
NdeII GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
NlaIV GGNNCC 4 cut(s) 7, 315, 552, 1432
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 1305, 1649
NspV TTCGAA 2 cut(s) 22, 1537
PaeI GCATGC 1 cut(s) 1649
PciI ACATGT 1 cut(s) 1301
PciSI GCTCTTC 3 cut(s) 1062, 1518, 1733
PctI GAATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 146, 264, 1915
PflFI GACNNNGTC 1 cut(s) 2285
PkrI GCNGC 4 cut(s) 1048, 1795, 1870, 2154
PleI GAGTC 4 cut(s) 534, 1684, 1813, 2311
PmaCI CACGTG 1 cut(s) 998
PmlI CACGTG 1 cut(s) 998
PpsI GAGTC 4 cut(s) 534, 1684, 1813, 2311
Ppu21I YACGTR 1 cut(s) 998
PscI ACATGT 1 cut(s) 1301
PshBI ATTAAT 1 cut(s) 2208
PspCI CACGTG 1 cut(s) 998
PspEI GGTNACC 1 cut(s) 2107
PspN4I GGNNCC 4 cut(s) 7, 315, 552, 1432
PspPI GGNCC 3 cut(s) 306, 336, 2287
PstI CTGCAG 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 2320
PsuI RGATCY 1 cut(s) 843
PsyI GACNNNGTC 1 cut(s) 2285
RsaI GTAC 5 cut(s) 188, 1348, 1640, 1716, 2192
RsaNI GTAC 5 cut(s) 187, 1347, 1639, 1715, 2191
RseI CAYNNNNRTG 3 cut(s) 293, 1877, 1879
SalI GTCGAC 1 cut(s) 2018
SapI GCTCTTC 3 cut(s) 1062, 1518, 1733
SaqAI TTAA 9 cut(s) 47, 225, 467, 627, 945, 1952, 2079, 2126, 2208
SatI GCNGC 4 cut(s) 1047, 1794, 1869, 2153
Sau3AI GATC 9 cut(s) 61, 721, 843, 1012, 1753, 1861, 1889, 1939, 2251
Sau96I GGNCC 3 cut(s) 306, 336, 2287
SchI GAGTC 4 cut(s) 535, 1685, 1813, 2311
ScrFI CCNGG 3 cut(s) 1968, 2139, 2157
SduI GDGCHC 4 cut(s) 143, 318, 486, 1620
SfaNI GCATC 1 cut(s) 939
SfcI CTRYAG 2 cut(s) 278, 2324
SfuI TTCGAA 2 cut(s) 22, 1537
SinI GGWCC 2 cut(s) 306, 2287
SmiMI CAYNNNNRTG 3 cut(s) 293, 1877, 1879
SmlI CTYRAG 2 cut(s) 839, 870
SmoI CTYRAG 2 cut(s) 839, 870
SphI GCATGC 1 cut(s) 1649
SsiI CCGC 4 cut(s) 304, 2188, 2243, 2290
SspI AATATT 2 cut(s) 325, 1225
SspMI CTAG 3 cut(s) 677, 783, 992
StyD4I CCNGG 3 cut(s) 1966, 2137, 2155
StyI CCWWGG 5 cut(s) 309, 554, 978, 1780, 2051
TaaI ACNGT 3 cut(s) 186, 1351, 1587
TaiI ACGT 2 cut(s) 701, 1000
TaqI TCGA 6 cut(s) 22, 375, 649, 1537, 1679, 2019
TatI WGTACW 2 cut(s) 186, 1638
TfiI GAWTC 3 cut(s) 146, 264, 1915
Tru1I TTAA 9 cut(s) 47, 225, 467, 627, 945, 1952, 2079, 2126, 2208
Tru9I TTAA 9 cut(s) 47, 225, 467, 627, 945, 1952, 2079, 2126, 2208
TscAI CASTG 5 cut(s) 189, 1320, 1470, 2043, 2070
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 4 cut(s) 1046, 1793, 1868, 2152
Tsp45I GTSAC 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 1814
TspRI CASTG 5 cut(s) 189, 1320, 1470, 2043, 2070
Tth111I GACNNNGTC 1 cut(s) 2285
VpaK11BI GGWCC 2 cut(s) 306, 2287
VspI ATTAAT 1 cut(s) 2208
XapI RAATTY 4 cut(s) 18, 113, 590, 1895
XceI RCATGY 2 cut(s) 1305, 1649
XmiI GTMKAC 2 cut(s) 2019, 2264
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 677, 783, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.