Rh7DG322300

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000290
Physical Location & Seq
Forward (+)
38543624 .. 38560691
17068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG322300.1

Sequence Viewer

Length: 903 bp
ATGGGTTCAAAGAAGACAGGAAAATCAAAAGAACGCAAAGATTCAACAAAAAAAGTGGAGAAGGTTGCTAGTCCAAATGAGACTGATGACGTGGTTGATGATAAAGATGACCAAGTATCAGCTGAAACTATGACGACCACTGAATCAGCGAAAGGAAAAACCAGAGGGAAGCGAACTGTGGCTGCAATGTACAAGGTAGTGGTGAAGAAAGCAATTGGGAAGAAATTTAAAGTTACATACAGCGACACGGGCAATCCAAACGGCAGAACACGGCACACTCTACAGTCATATATAGGCATGTTGGTGAGGACAATGGTTCCCATCAACGTGGACAGCTGGCCTGAGGTGGATCCTGATTTGAAAGCAAATATTTGGACAGATATTCAGGATACATTCAAAGTAGCCCCTGAAAGCAGAAAACTAGTGTTGTCATCAGCTAGTGTGAAATGGAGATACTTCAAGACCACATTAACAAGGAAGTATGTTCTGCCATTCTTGGGAAAGAAGAAAAAATTGAGAAAGCCACCAAAGCAGTACTCCTATGTTGGCCTACAACCGTGGAAGGAATTTGTAAAACAACGGACTAGTGAGGCATGGCTGAAACTTCATCAAAAACAAAGTGAACGAGTGAGGAAGAGAAAGTACCATCACAGATTATCAAGAAAGGGATACCTTGGACTAGAGGAGGAATTGAAACGAAAGTTGCCTGAAGGAGAGGTAATTGATCGGGCAGTTATGTGGAAGAAAGCCCGTATACCAAAAAATGGAAAGATAGATGAAGAACTCTCATTGGTGGCAGCAAAAATATTGAGATTCATGGTCTCTCGATCACCTTGTCACGATCTCATTGTCTATATTTCTGGCCTCTTTCACCTTGGCGTGATCTCTCGCTCTTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

300

Amino Acids

34.53

Weight (kDa)

10.11

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 764
AccI GTMKAC 1 cut(s) 754
AclWI GGATC 2 cut(s) 344, 357
AcsI RAATTY 2 cut(s) 224, 566
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 3 cut(s) 191, 536, 644
AfiI CCNNNNNNNGG 2 cut(s) 497, 764
AgsI TTSAA 6 cut(s) 9, 45, 361, 397, 460, 694
AhlI ACTAGT 2 cut(s) 421, 584
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 3 cut(s) 122, 336, 437
AluI AGCT 3 cut(s) 122, 336, 437
Alw26I GTCTC 2 cut(s) 74, 826
AlwI GGATC 2 cut(s) 344, 357
AoxI GGCC 3 cut(s) 338, 547, 862
ApeKI GCWGC 2 cut(s) 182, 797
ApoI RAATTY 2 cut(s) 224, 566
AsuHPI GGTGA 4 cut(s) 214, 316, 822, 863
AxyI CCTNAGG 1 cut(s) 342
BamHI GGATCC 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 169, 809
BccI CCATC 2 cut(s) 329, 654
BceAI ACGGC 2 cut(s) 277, 287
BciVI GTATCC 2 cut(s) 382, 662
BcoDI GTCTC 2 cut(s) 74, 826
BcuI ACTAGT 2 cut(s) 421, 584
BfaI CTAG 5 cut(s) 69, 422, 438, 585, 680
BfmI CTRYAG 1 cut(s) 281
BfuI GTATCC 2 cut(s) 382, 662
BisI GCNGC 2 cut(s) 183, 798
BlsI GCNGC 2 cut(s) 184, 799
BmcAI AGTACT 1 cut(s) 536
BmgBI CACGTC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 318, 351
BpiI GAAGAC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 3 cut(s) 557, 673, 874
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 764
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 557, 673, 874
BseLI CCNNNNNNNGG 2 cut(s) 497, 764
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 2 cut(s) 169, 809
BshFI GGCC 3 cut(s) 340, 549, 864
BslI CCNNNNNNNGG 2 cut(s) 497, 764
BsmAI GTCTC 2 cut(s) 74, 826
BsnI GGCC 3 cut(s) 340, 549, 864
Bso31I GGTCTC 1 cut(s) 826
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 5 cut(s) 349, 724, 827, 841, 882
BspANI GGCC 3 cut(s) 340, 549, 864
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 318, 351
BspPI GGATC 2 cut(s) 344, 357
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 557, 673, 874
BssMI GATC 5 cut(s) 349, 724, 827, 841, 882
BssNAI GTATAC 1 cut(s) 755
BssT1I CCWWGG 2 cut(s) 673, 874
Bst1107I GTATAC 1 cut(s) 755
Bst4CI ACNGT 3 cut(s) 178, 285, 558
Bst6I CTCTTC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 557
BstKTI GATC 5 cut(s) 352, 727, 830, 844, 885
BstMAI GTCTC 2 cut(s) 74, 826
BstMBI GATC 5 cut(s) 349, 724, 827, 841, 882
BstMWI GCNNNNNNNGC 2 cut(s) 249, 529
BstNSI RCATGY 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 169, 809
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 755
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 2 cut(s) 382, 662
BsuRI GGCC 3 cut(s) 340, 549, 864
BtgI CCRYGG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 338
Csp6I GTAC 3 cut(s) 190, 535, 643
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 3 cut(s) 298, 594, 817
CviQI GTAC 3 cut(s) 190, 535, 643
DdeI CTNAG 1 cut(s) 342
DpnI GATC 5 cut(s) 351, 726, 829, 843, 884
DpnII GATC 5 cut(s) 349, 724, 827, 841, 882
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 2 cut(s) 673, 874
Eco31I GGTCTC 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 673, 874
ErhI CCWWGG 2 cut(s) 673, 874
FaeI CATG 3 cut(s) 301, 597, 820
FatI CATG 3 cut(s) 297, 593, 816
FblI GTMKAC 1 cut(s) 754
Fnu4HI GCNGC 2 cut(s) 183, 798
Fsp4HI GCNGC 2 cut(s) 183, 798
FspBI CTAG 5 cut(s) 69, 422, 438, 585, 680
GluI GCNGC 2 cut(s) 183, 798
HaeIII GGCC 3 cut(s) 340, 549, 864
Hin1II CATG 3 cut(s) 301, 597, 820
HinfI GANTC 3 cut(s) 41, 143, 813
HphI GGTGA 4 cut(s) 214, 316, 822, 863
Hpy166II GTNNAC 3 cut(s) 331, 623, 755
Hpy188III TCNNGA 6 cut(s) 353, 386, 460, 660, 825, 839
Hpy8I GTNNAC 3 cut(s) 331, 623, 755
HpyAV CCTTC 3 cut(s) 55, 556, 704
HpyCH4III ACNGT 3 cut(s) 178, 285, 558
HpyCH4IV ACGT 2 cut(s) 90, 327
HpyCH4V TGCA 2 cut(s) 185, 897
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 529
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 90, 327
Hsp92II CATG 3 cut(s) 301, 597, 820
Kzo9I GATC 5 cut(s) 349, 724, 827, 841, 882
LpnPI CCDG 9 cut(s) 3, 175, 322, 354, 366, 371, 420, 720, 846
Lsp1109I GCAGC 2 cut(s) 169, 809
MaeI CTAG 5 cut(s) 69, 422, 438, 585, 680
MaeII ACGT 2 cut(s) 90, 327
MaeIII GTNAC 2 cut(s) 232, 836
MalI GATC 5 cut(s) 351, 726, 829, 843, 884
MboI GATC 5 cut(s) 349, 724, 827, 841, 882
MboII GAAGA 7 cut(s) 25, 217, 232, 517, 646, 754, 791
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 349
MluCI AATT 6 cut(s) 213, 224, 512, 566, 689, 720
MnlI CCTC 9 cut(s) 158, 300, 337, 583, 624, 676, 679, 709, 875
MseI TTAA 2 cut(s) 228, 470
MslI CAYNNNNRTG 2 cut(s) 302, 326
MspA1I CMGCKG 2 cut(s) 122, 336
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 249, 529
NdeII GATC 5 cut(s) 349, 724, 827, 841, 882
NlaIII CATG 3 cut(s) 301, 597, 820
NlaIV GGNNCC 2 cut(s) 318, 351
NmuCI GTSAC 1 cut(s) 836
NspI RCATGY 1 cut(s) 301
PfeI GAWTC 3 cut(s) 41, 143, 813
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 2 cut(s) 184, 799
PspN4I GGNNCC 2 cut(s) 318, 351
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 122, 336
RsaI GTAC 3 cut(s) 191, 536, 644
RsaNI GTAC 3 cut(s) 190, 535, 643
RseI CAYNNNNRTG 2 cut(s) 302, 326
SaqAI TTAA 2 cut(s) 228, 470
SatI GCNGC 2 cut(s) 183, 798
Sau3AI GATC 5 cut(s) 349, 724, 827, 841, 882
ScaI AGTACT 1 cut(s) 536
SfcI CTRYAG 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 302, 326
SpeI ACTAGT 2 cut(s) 421, 584
Sse9I AATT 6 cut(s) 213, 224, 512, 566, 689, 720
SspI AATATT 2 cut(s) 370, 807
SspMI CTAG 5 cut(s) 69, 422, 438, 585, 680
StyI CCWWGG 2 cut(s) 673, 874
TaaI ACNGT 3 cut(s) 178, 285, 558
TaiI ACGT 2 cut(s) 93, 330
TaqI TCGA 1 cut(s) 826
TasI AATT 6 cut(s) 213, 224, 512, 566, 689, 720
TatI WGTACW 2 cut(s) 189, 534
TfiI GAWTC 3 cut(s) 41, 143, 813
Tru1I TTAA 2 cut(s) 228, 470
Tru9I TTAA 2 cut(s) 228, 470
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 2 cut(s) 182, 797
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 3 cut(s) 596, 792, 805
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 764
XapI RAATTY 2 cut(s) 224, 566
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 754
XspI CTAG 5 cut(s) 69, 422, 438, 585, 680
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.