Rh3DG259400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000290
Physical Location & Seq
Reverse (-)
25675399 .. 25676562
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG259400.1

Sequence Viewer

Length: 624 bp
ATGGGTTCCAAGAAGGGAAAATCAAAAGGAGGCAAAAAATCAAAGAACAAAGCAGATAATGATACTAGTCCTGTTGAGATTGATGGCATGGTTGATGGTGGAGAGGATTCTGCTACAACTGAAACTATGACGAGCACGGAATCAGCCAAAGGAAAAAGCAGAGGAAAGCGAACTGTGGTTGCTTTGTACAAGGTTGTGGTGAAGAAAGCACTTGGGAGGAAATTCAAGGTGACCTACAGTGAAACAGGAAATCCAAATGGCAAAACACGGCACACTCTACAGTCTTATATAGGCATGTTGGTGCGGAAAATGGTTCCCATCAACGTTGTTAGCTGGCCTGAGGTGGATGGAGACTTGAAAGAAAATCTTTGGATCGATGTTCAGGATACATTCAAAGTAGCCCCTGAAAGTAGAAAACTAGTGTTGACATCAGCTGGCACAAAATGGAGACAATTCAAGACCACATTAACAAATAAGTATGTGCTGCCACTCTTGGGCAAAAAGAAAAAATTGAGAAAGCCACCGAAGCAGTACTCCTTTGTTGGCCTAGAACCATTGAAGGAATTTGTAAAACAGCGGTGCACTGAGAAATGGATGAAACTACATAATGAACAAAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

207

Amino Acids

23.19

Weight (kDa)

10.02

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 304, 577
AclI AACGTT 1 cut(s) 324
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 221, 563
AfaI GTAC 2 cut(s) 188, 533
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 5 cut(s) 226, 358, 394, 457, 559
AhlI ACTAGT 2 cut(s) 65, 418
AluBI AGCT 2 cut(s) 333, 434
AluI AGCT 2 cut(s) 333, 434
Alw21I GWGCWC 2 cut(s) 137, 584
Alw26I GTCTC 2 cut(s) 345, 442
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 1 cut(s) 380
AoxI GGCC 2 cut(s) 335, 544
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 221, 563
AsuHPI GGTGA 2 cut(s) 211, 241
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 584
Bbv12I GWGCWC 2 cut(s) 137, 584
BbvI GCAGC 1 cut(s) 471
BccI CCATC 4 cut(s) 77, 89, 326, 341
BceAI ACGGC 1 cut(s) 284
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 345, 442
BcuI ACTAGT 2 cut(s) 65, 418
BfaI CTAG 3 cut(s) 66, 419, 548
BfmI CTRYAG 2 cut(s) 235, 278
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
BmcAI AGTACT 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 7, 315
Bsa29I ATCGAT 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse21I CCTNAGG 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 2 cut(s) 352, 600
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 330, 576
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 1 cut(s) 471
BshFI GGCC 2 cut(s) 337, 546
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 137, 584
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 2 cut(s) 345, 442
BsnI GGCC 2 cut(s) 337, 546
Bsp1286I GDGCHC 2 cut(s) 137, 584
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 2 cut(s) 304, 577
BspANI GGCC 2 cut(s) 337, 546
BspCNI CTCAG 2 cut(s) 331, 577
BspDI ATCGAT 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 7, 315
BspPI GGATC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 186
BssMI GATC 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 175, 239, 282
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 335, 436
BstDEI CTNAG 2 cut(s) 339, 585
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 2 cut(s) 352, 600
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 345, 442
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNSI RCATGY 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 235, 278
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 339
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 337, 546
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 2 cut(s) 352, 600
BtsIMutI CAGTG 2 cut(s) 244, 582
Cac8I GCNNGC 2 cut(s) 335, 436
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 2 cut(s) 187, 532
CviAII CATG 3 cut(s) 88, 295, 621
CviJI RGCY 7 cut(s) 146, 333, 337, 401, 434, 520, 546
CviKI_1 RGCY 7 cut(s) 146, 333, 337, 401, 434, 520, 546
CviQI GTAC 2 cut(s) 187, 532
DdeI CTNAG 2 cut(s) 339, 585
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
FaeI CATG 3 cut(s) 91, 298, 624
FaiI YATR 8 cut(s) 89, 128, 288, 290, 296, 480, 606, 622
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 3 cut(s) 87, 294, 620
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 2 cut(s) 359, 607
Fsp4HI GCNGC 1 cut(s) 485
FspBI CTAG 3 cut(s) 66, 419, 548
GluI GCNGC 1 cut(s) 485
HaeIII GGCC 2 cut(s) 337, 546
Hin1II CATG 3 cut(s) 91, 298, 624
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 2 cut(s) 107, 140
HphI GGTGA 2 cut(s) 211, 241
Hpy166II GTNNAC 2 cut(s) 426, 582
Hpy188III TCNNGA 2 cut(s) 383, 457
Hpy8I GTNNAC 2 cut(s) 426, 582
HpyAV CCTTC 2 cut(s) 7, 553
HpyCH4III ACNGT 3 cut(s) 175, 239, 282
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 582, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 2 cut(s) 339, 585
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 3 cut(s) 91, 298, 624
Kzo9I GATC 1 cut(s) 372
LpnPI CCDG 7 cut(s) 84, 231, 319, 351, 368, 417, 420
Lsp1109I GCAGC 1 cut(s) 471
MaeI CTAG 3 cut(s) 66, 419, 548
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 137, 584
MluCI AATT 4 cut(s) 221, 452, 509, 563
MnlI CCTC 5 cut(s) 23, 97, 155, 210, 334
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 2 cut(s) 434, 577
MwoI GCNNNNNNNGC 1 cut(s) 526
NdeII GATC 1 cut(s) 372
NlaIII CATG 3 cut(s) 91, 298, 624
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 298
PfeI GAWTC 2 cut(s) 107, 140
PkrI GCNGC 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 7, 315
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 188, 533
RsaNI GTAC 2 cut(s) 187, 532
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 1 cut(s) 372
ScaI AGTACT 1 cut(s) 533
SduI GDGCHC 2 cut(s) 137, 584
SetI ASST 7 cut(s) 195, 231, 236, 327, 335, 345, 436
SfcI CTRYAG 2 cut(s) 235, 278
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 2 cut(s) 65, 418
Sse9I AATT 4 cut(s) 221, 452, 509, 563
SsiI CCGC 2 cut(s) 304, 577
SspMI CTAG 3 cut(s) 66, 419, 548
TaaI ACNGT 3 cut(s) 175, 239, 282
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 221, 452, 509, 563
TatI WGTACW 2 cut(s) 186, 531
TfiI GAWTC 2 cut(s) 107, 140
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 244, 589
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 611, 624
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 244, 589
VneI GTGCAC 1 cut(s) 580
XapI RAATTY 2 cut(s) 221, 563
XceI RCATGY 1 cut(s) 298
XspI CTAG 3 cut(s) 66, 419, 548
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.