RchiOBHm_Chr6g0269251

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000290
Physical Location & Seq
Reverse (-)
26519651 .. 26523545
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24152

Sequence Viewer

Length: 285 bp
ATGTCGATATCTAAAGAAGTGTTTGGCGAACCCACGCAACTCTTTATCTTGTCTGAGAATGTGATTAATCTGTTGGAGATGCAGTGGATTGGCCAAGGAGCATATGAGGGGTACTTGCATGAACTTATTACTGAAAGGGACCTTTTGGACACCTTTGCTTTTGTTGATCCGACAGCTACATATAATTGTCAAAGACCGGACTTTGTGCGGTACTTAGTTGATTGGTTAAAAGAGGGAAAATCTGATCATATTTTCTTTATGCCTTACAATCCGGGTGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

94

Amino Acids

10.97

Weight (kDa)

4.55

Isoelectric Point (pI)

22.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 208, 280
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 113, 212
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 91
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 93
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
BseDI CCNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 45
BshFI GGCC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 197, 272
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 166, 244
BspACI CCGC 2 cut(s) 208, 280
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 166, 244
BssT1I CCWWGG 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 54, 214
BstKTI GATC 2 cut(s) 169, 247
BstMBI GATC 2 cut(s) 166, 244
BstSCI CCNGG 1 cut(s) 271
BsuRI GGCC 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 112, 211
CspCI CAANNNNNGTGG 1 cut(s) 256
CviAII CATG 1 cut(s) 119
CviJI RGCY 2 cut(s) 93, 176
CviKI_1 RGCY 2 cut(s) 93, 176
CviQI GTAC 2 cut(s) 112, 211
DdeI CTNAG 2 cut(s) 54, 214
DpnI GATC 2 cut(s) 168, 246
DpnII GATC 2 cut(s) 166, 244
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 94
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 122
FaiI YATR 7 cut(s) 103, 105, 120, 181, 183, 249, 260
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 118
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 244
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 197, 272
Hin1II CATG 1 cut(s) 122
HpaII CCGG 2 cut(s) 197, 272
Hpy188I TCNGA 3 cut(s) 55, 171, 244
HpyCH4V TGCA 2 cut(s) 82, 118
HpyF3I CTNAG 2 cut(s) 54, 214
Hsp92II CATG 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 166, 244
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 1 cut(s) 210
LweI GCATC 1 cut(s) 69
MalI GATC 2 cut(s) 168, 246
MboI GATC 2 cut(s) 166, 244
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 1 cut(s) 184
MluNI TGGCCA 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 54, 194
MnlI CCTC 2 cut(s) 100, 226
Mox20I TGGCCA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 93
MseI TTAA 2 cut(s) 66, 227
Msp20I TGGCCA 1 cut(s) 93
MspI CCGG 2 cut(s) 197, 272
MspR9I CCNGG 1 cut(s) 273
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 103
NdeII GATC 2 cut(s) 166, 244
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 113, 212
RsaNI GTAC 2 cut(s) 112, 211
SaqAI TTAA 2 cut(s) 66, 227
Sau3AI GATC 2 cut(s) 166, 244
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 273
SetI ASST 3 cut(s) 144, 155, 178
SfaNI GCATC 1 cut(s) 69
SgeI CNNG 6 cut(s) 46, 61, 107, 127, 131, 209
SinI GGWCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 184
SsiI CCGC 2 cut(s) 208, 280
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 184
Tru1I TTAA 2 cut(s) 66, 227
Tru9I TTAA 2 cut(s) 66, 227
TscAI CASTG 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 139
VspI ATTAAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.