Rroxscaffold_6G00389290

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000290
Physical Location & Seq
Reverse (-)
2719483 .. 2720136
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389290.1

Sequence Viewer

Length: 300 bp
ATGATACATGGAGCTGCATTGAAGGAGGGATGCGTTAGAGTGTCGGTGGATGGTGAGATTCAAGGTGATGCACCACTTCCTTTCCCTATAGCGGGTGAGATGGAATTGGTTCGAGAAGCCATTGGAAGTCACGTGGCTTGGCTCGAGGAGCTTGTAATTCGGAGACAGCCATCAAAGAAAAAGATAAGGAAGAATGATTTTGTCAAATCATTGTTCAATAAAGCTCGAGGTCAACCCGTTTGTGCCCAAGCGCTGCAGGCTATTGTACAAACATGCCACAACAATCATGACACATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

99

Amino Acids

10.98

Weight (kDa)

8.54

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 1 - 53 3.1e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AcvI CACGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 267
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 91, 92
AgsI TTSAA 3 cut(s) 22, 62, 217
AluBI AGCT 3 cut(s) 14, 151, 224
AluI AGCT 3 cut(s) 14, 151, 224
Alw26I GTCTC 1 cut(s) 157
Ama87I CYCGRG 2 cut(s) 143, 225
Aor51HI AGCGCT 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 14, 253
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 65, 77, 107
AvaI CYCGRG 2 cut(s) 143, 225
BaeGI GKGCMC 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 133
BbvI GCAGC 1 cut(s) 240
BccI CCATC 3 cut(s) 44, 94, 178
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 298
BfmI CTRYAG 2 cut(s) 87, 254
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 2 cut(s) 15, 254
BlsI GCNGC 2 cut(s) 16, 255
BmeT110I CYCGRG 2 cut(s) 143, 225
BmsI GCATC 2 cut(s) 20, 58
BsaAI YACGTR 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 92
BseGI GGATG 2 cut(s) 35, 55
BseLI CCNNNNNNNGG 2 cut(s) 91, 92
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 143, 225
BslI CCNNNNNNNGG 2 cut(s) 91, 92
BsmAI GTCTC 1 cut(s) 157
BsoBI CYCGRG 2 cut(s) 143, 225
Bsp1286I GDGCHC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 265
BspACI CCGC 1 cut(s) 92
BspHI TCATGA 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 258
BstF5I GGATG 2 cut(s) 35, 55
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 148, 257
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 87, 254
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 35, 55
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 266
CviAII CATG 3 cut(s) 8, 273, 287
CviJI RGCY 8 cut(s) 14, 119, 137, 142, 151, 169, 224, 260
CviKI_1 RGCY 8 cut(s) 14, 119, 137, 142, 151, 169, 224, 260
CviQI GTAC 1 cut(s) 266
Eco47III AGCGCT 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 143, 225
FaeI CATG 3 cut(s) 11, 276, 290
FaiI YATR 5 cut(s) 9, 89, 274, 288, 295
FatI CATG 3 cut(s) 7, 272, 286
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 15, 254
FokI GGATG 2 cut(s) 42, 62
Fsp4HI GCNGC 2 cut(s) 15, 254
FspBI CTAG 1 cut(s) 298
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 15, 254
HaeII RGCGCY 1 cut(s) 254
HhaI GCGC 1 cut(s) 253
Hin1II CATG 3 cut(s) 11, 276, 290
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 1 cut(s) 58
HphI GGTGA 3 cut(s) 65, 77, 107
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 113, 287
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 17, 71, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 257
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 11, 276, 290
HspAI GCGC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 11, 148
LpnPI CCDG 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 2 cut(s) 20, 58
MaeI CTAG 1 cut(s) 298
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 128
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 2 cut(s) 104, 156
MnlI CCTC 3 cut(s) 19, 139, 221
MroXI GAANNNNTTC 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 148, 257
NlaIII CATG 3 cut(s) 11, 276, 290
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 276
PaeR7I CTCGAG 2 cut(s) 143, 225
PagI TCATGA 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 16, 255
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 133
PspCI CACGTG 1 cut(s) 133
PspXI VCTCGAGB 2 cut(s) 143, 225
PstI CTGCAG 1 cut(s) 258
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SatI GCNGC 2 cut(s) 15, 254
SduI GDGCHC 1 cut(s) 247
SetI ASST 6 cut(s) 16, 67, 135, 153, 226, 232
SfaNI GCATC 2 cut(s) 20, 58
SfcI CTRYAG 2 cut(s) 87, 254
Sfr274I CTCGAG 2 cut(s) 143, 225
SlaI CTCGAG 2 cut(s) 143, 225
SmlI CTYRAG 2 cut(s) 143, 225
SmoI CTYRAG 2 cut(s) 143, 225
Sse9I AATT 2 cut(s) 104, 156
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 298
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 112, 144, 226
TasI AATT 2 cut(s) 104, 156
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 1 cut(s) 58
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 14, 253
Tsp45I GTSAC 1 cut(s) 128
XceI RCATGY 1 cut(s) 276
XhoI CTCGAG 2 cut(s) 143, 225
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.