Rh5DG235600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000290
Physical Location & Seq
Forward (+)
26890412 .. 26910928
20517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG235600.1

Sequence Viewer

Length: 303 bp
ATGTGCTCCAACATCTTCAAAGATCGATCTGTTCTCCAACATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATCTGTGCTCCAAGCTCTTCAAAGCTCAAATGGAAAGAAGAGCATCAATCTGGAGAAAGACGTTGCCCGAAGGAGAGGTCATTGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGAAAAGATGGGGACATAGATGAGGAGGCTAGAGGTGTGGCCACAAAGATAGATGATTTGTTGGAAAAGAAAAGTAAGGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.68

Weight (kDa)

9.62

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 4 cut(s) 19, 47, 75, 121
AluBI AGCT 3 cut(s) 115, 125, 300
AluI AGCT 3 cut(s) 115, 125, 300
Alw21I GWGCWC 3 cut(s) 8, 64, 110
AoxI GGCC 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
BalI TGGCCA 1 cut(s) 257
Bbv12I GWGCWC 3 cut(s) 8, 64, 110
BccI CCATC 1 cut(s) 218
BfaI CTAG 1 cut(s) 246
BmsI GCATC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 172
Bsa29I ATCGAT 3 cut(s) 25, 53, 99
BseCI ATCGAT 3 cut(s) 25, 53, 99
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 1 cut(s) 257
BshVI ATCGAT 3 cut(s) 25, 53, 99
BsiHKAI GWGCWC 3 cut(s) 8, 64, 110
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 3 cut(s) 8, 64, 110
Bsp143I GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
BspANI GGCC 1 cut(s) 257
BspDI ATCGAT 3 cut(s) 25, 53, 99
BspQI GCTCTTC 2 cut(s) 122, 133
BssMI GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
Bst6I CTCTTC 2 cut(s) 122, 133
BstKTI GATC 7 cut(s) 25, 29, 53, 57, 99, 103, 187
BstMBI GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
Bsu15I ATCGAT 3 cut(s) 25, 53, 99
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 3 cut(s) 25, 53, 99
ClaI ATCGAT 3 cut(s) 25, 53, 99
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 6 cut(s) 115, 125, 209, 245, 257, 300
CviKI_1 RGCY 6 cut(s) 115, 125, 209, 245, 257, 300
CviQI GTAC 1 cut(s) 81
DpnI GATC 7 cut(s) 24, 28, 52, 56, 98, 102, 186
DpnII GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 122, 133
EarI CTCTTC 2 cut(s) 122, 133
FaiI YATR 2 cut(s) 197, 233
FaqI GGGAC 1 cut(s) 242
FspBI CTAG 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 92, 151
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 161
Kzo9I GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
LguI GCTCTTC 2 cut(s) 122, 133
LmnI GCTCC 3 cut(s) 11, 67, 113
LpnPI CCDG 1 cut(s) 136
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 161
MalI GATC 7 cut(s) 24, 28, 52, 56, 98, 102, 186
MboI GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
MboII GAAGA 6 cut(s) 7, 35, 63, 109, 150, 214
MhlI GDGCHC 3 cut(s) 8, 64, 110
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 192
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 3 cut(s) 33, 61, 258
MnlI CCTC 4 cut(s) 169, 232, 235, 242
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
NdeII GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
PciSI GCTCTTC 2 cut(s) 122, 133
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 122, 133
Sau3AI GATC 7 cut(s) 22, 26, 50, 54, 96, 100, 184
SduI GDGCHC 3 cut(s) 8, 64, 110
SetI ASST 6 cut(s) 117, 127, 164, 180, 253, 302
SfaNI GCATC 1 cut(s) 152
SgeI CNNG 7 cut(s) 104, 124, 163, 179, 200, 222, 258
Sse9I AATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 246
TaiI ACGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 25, 53, 91, 99
TasI AATT 1 cut(s) 192
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.