RchiOBHm_Chr7g0242811

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000290
Physical Location & Seq
Reverse (-)
69158954 .. 69159379
426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21761

Sequence Viewer

Length: 255 bp
ATGCCTTACAATCCGGGGAAGCATTGGATATTAACTATCTTATGGGAGGGTGAAATCTACATGTTGGATCCGTTGCCAAAACCAGTCCATTATCAAGTTTGGGAGACCTCGCTGATAAATGTTGTGAAAACCTTCAATGCTGAAACTGGTATGGTCAACAAACTACCTAAAGTGAAATCGCTTCCGGTGAGACTTATACATGTGTTTGGCTTGGATAATACATTAGATCTAATATGTCAATGCCTGTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

84

Amino Acids

9.68

Weight (kDa)

6.81

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 62, 75
AflIII ACRYGT 2 cut(s) 60, 199
AgsI TTSAA 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 98, 184
AlwI GGATC 2 cut(s) 62, 75
Asp700I GAANNNNTTC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 62, 199
BamHI GGATCC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 98, 184
BglII AGATCT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 83, 151
BseDI CCNNGG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 83, 151
BsiSI CCGG 2 cut(s) 14, 185
BsmAI GTCTC 2 cut(s) 98, 184
Bso31I GGTCTC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 67, 226
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 62, 75
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 83, 151
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 67, 226
BstKTI GATC 2 cut(s) 70, 229
BstMAI GTCTC 2 cut(s) 98, 184
BstMBI GATC 2 cut(s) 67, 226
BstNSI RCATGY 2 cut(s) 64, 203
BstSCI CCNGG 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 67, 226
BstYI RGATCY 2 cut(s) 67, 226
CviAII CATG 2 cut(s) 61, 200
CviJI RGCY 1 cut(s) 210
CviKI_1 RGCY 1 cut(s) 210
DpnI GATC 2 cut(s) 69, 228
DpnII GATC 2 cut(s) 67, 226
Eco31I GGTCTC 1 cut(s) 98
FaeI CATG 2 cut(s) 64, 203
FaiI YATR 6 cut(s) 43, 62, 152, 197, 201, 235
FatI CATG 2 cut(s) 60, 199
HapII CCGG 2 cut(s) 14, 185
Hin1II CATG 2 cut(s) 64, 203
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 14, 185
HphI GGTGA 2 cut(s) 62, 199
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 142
Hsp92II CATG 2 cut(s) 64, 203
Kzo9I GATC 2 cut(s) 67, 226
LpnPI CCDG 4 cut(s) 27, 96, 132, 198
MalI GATC 2 cut(s) 69, 228
MboI GATC 2 cut(s) 67, 226
MflI RGATCY 2 cut(s) 67, 226
MluCI AATT 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 2 cut(s) 40, 118
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 1 cut(s) 32
MspI CCGG 2 cut(s) 14, 185
MspR9I CCNGG 1 cut(s) 15
NciI CCSGG 1 cut(s) 15
NdeII GATC 2 cut(s) 67, 226
NlaIII CATG 2 cut(s) 64, 203
NlaIV GGNNCC 1 cut(s) 69
NspI RCATGY 2 cut(s) 64, 203
PciI ACATGT 2 cut(s) 60, 199
PdmI GAANNNNTTC 1 cut(s) 131
PscI ACATGT 2 cut(s) 60, 199
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 2 cut(s) 67, 226
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 67, 226
ScrFI CCNGG 1 cut(s) 15
SetI ASST 3 cut(s) 110, 134, 169
Sse9I AATT 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 13
TasI AATT 1 cut(s) 250
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 60
XceI RCATGY 2 cut(s) 64, 203
XmnI GAANNNNTTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.