RchiOBHm_Chr6g0274141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000290
Physical Location & Seq
Reverse (-)
35461189 .. 35463949
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24594

Sequence Viewer

Length: 258 bp
ATGTCCTCATCCTTTTCTAACAATTACATTGAGCCAATAGGGTTACTTTTAGCGTCTCCATTCTCTCTTCCCAACGTCCTCTTGCCGTCAACATATCTTCCAACTCTCGAGAGATCGCTCTGTGCTCCGATATCTTCAAAGCGTACCATTTTTTTCTCTGTCACTGCCTCTCTCTCTCTGTCTCTCTCTCAAACTCAGCAGCAAATTGATTCAGAAAGTGATGAATTGATTCAGCGAATCAAACTCACTAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.38

Weight (kDa)

6.09

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 138
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 60, 186
Ama87I CYCGRG 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 60, 186
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 107
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 60, 186
BsmBI CGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 208
BssMI GATC 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 2 cut(s) 60, 186
BstMBI GATC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 144
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 60
FaiI YATR 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HgaI GACGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 209, 229, 237
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 2 cut(s) 129, 214
Hpy188III TCNNGA 2 cut(s) 107, 109
Hpy8I GTNNAC 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 75
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 211
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 42, 160
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 3 cut(s) 59, 89, 126
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 3 cut(s) 22, 204, 224
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 3 cut(s) 16, 89, 178
MroXI GAANNNNTTC 1 cut(s) 228
NdeII GATC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 209, 229, 237
PkrI GCNGC 1 cut(s) 201
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 127
SetI ASST 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 107
SgeI CNNG 3 cut(s) 94, 119, 121
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 22, 204, 224
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 22, 204, 224
TfiI GAWTC 3 cut(s) 209, 229, 237
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.