Rmu_sc0001461.1_g000092

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000290
Physical Location & Seq
Forward (+)
326925 .. 328598
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000092.1.cds

Sequence Viewer

Length: 651 bp
atgggttccaagaagggaaaatcaaaaggaggcaaaaaatcaaagaacaaagtggataaggatactagtcctgttaagactgatgacatggttgatgatggagaggattctgttacagttgatgaaactatgacgagcacagaatcagccagaggaaaaagcagaggaaagcgaactgtggttgctttgtacaaggttgtggtgaaaaaagcacttgggaggaaatttaaggtgacctacagtgaaacaggcaatccaaatggtagaacacggcacactctacagtcgtatataggcatgttggtgcggaaaatggttcccatcaacgttgttagctggcctgaggtggatggagacttgaaagaaaatctttggatcgatgttcagaatgaactattggaaaagaagagtaagggggagctggaaatgtcagggagtagtgatattctgtctcaagcgctagaaactcctgaacactcgggtagggtgaggggtgttggaggcttcgtcaatccatccacctactttaatcttccaaagaaaaagaggattcaaattactaaggcagatatattggcccgtgataaagagcgttatatggagttagaggagacaaagagaatgcttcttgctcagcaaagaaagacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

9.73

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AclI AACGTT 1 cut(s) 327
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 191
AfeI AGCGCT 1 cut(s) 459
AgsI TTSAA 2 cut(s) 361, 554
AhlI ACTAGT 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 2 cut(s) 336, 421
AluI AGCT 2 cut(s) 336, 421
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 3 cut(s) 348, 456, 605
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 2 cut(s) 338, 576
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 3 cut(s) 214, 244, 499
AvaI CYCGRG 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 4 cut(s) 92, 329, 344, 523
BceAI ACGGC 1 cut(s) 287
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 348, 456, 605
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 461
BfmI CTRYAG 2 cut(s) 238, 281
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 1 cut(s) 55
BlpI GCTNAGC 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 7, 318
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bse21I CCTNAGG 1 cut(s) 342
BseCI ATCGAT 1 cut(s) 378
BseGI GGATG 2 cut(s) 355, 515
BseMII CTCAG 2 cut(s) 333, 647
BseRI GAGGAG 1 cut(s) 623
BshFI GGCC 2 cut(s) 340, 578
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 478
BsmAI GTCTC 3 cut(s) 348, 456, 605
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 2 cut(s) 340, 578
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 375
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 1 cut(s) 307
BspANI GGCC 2 cut(s) 340, 578
BspCNI CTCAG 2 cut(s) 334, 646
BspDI ATCGAT 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 7, 318
BspPI GGATC 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 189
BssMI GATC 1 cut(s) 375
Bst4CI ACNGT 4 cut(s) 118, 178, 242, 285
Bst6I CTCTTC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 342, 561, 633
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 355, 515
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 3 cut(s) 348, 456, 605
BstMBI GATC 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 301
BstPI GGTNACC 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 238, 281
Bsu15I ATCGAT 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 340, 578
BsuTUI ATCGAT 1 cut(s) 378
BtsCI GGATG 2 cut(s) 355, 515
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 577
ClaI ATCGAT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 88, 298
CviJI RGCY 6 cut(s) 149, 336, 340, 421, 504, 578
CviKI_1 RGCY 6 cut(s) 149, 336, 340, 421, 504, 578
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 342, 561, 633
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco47III AGCGCT 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 232
FaeI CATG 2 cut(s) 91, 301
FaiI YATR 8 cut(s) 89, 131, 291, 293, 299, 572, 597, 599
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 87, 297
FokI GGATG 2 cut(s) 362, 502
FspBI CTAG 2 cut(s) 66, 461
GlaI GCGC 1 cut(s) 459
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 2 cut(s) 340, 578
HhaI GCGC 1 cut(s) 460
Hin1II CATG 2 cut(s) 91, 301
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HinfI GANTC 3 cut(s) 107, 143, 550
HphI GGTGA 3 cut(s) 214, 244, 499
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 1 cut(s) 470
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 4 cut(s) 118, 178, 242, 285
HpyCH4IV ACGT 2 cut(s) 327, 647
HpyF3I CTNAG 3 cut(s) 342, 561, 633
HpySE526I ACGT 2 cut(s) 327, 647
Hsp92II CATG 2 cut(s) 91, 301
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 8 cut(s) 84, 163, 234, 322, 354, 407, 417, 483
MaeI CTAG 2 cut(s) 66, 461
MaeII ACGT 2 cut(s) 327, 647
MaeIII GTNAC 2 cut(s) 112, 232
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 2 cut(s) 418, 524
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 2 cut(s) 224, 555
MmeI TCCRAC 1 cut(s) 478
MseI TTAA 3 cut(s) 75, 228, 528
MslI CAYNNNNRTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 627
NdeII GATC 1 cut(s) 375
NlaIII CATG 2 cut(s) 91, 301
NlaIV GGNNCC 2 cut(s) 7, 318
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 301
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 107, 143, 550
Psp1406I AACGTT 1 cut(s) 327
PspEI GGTNACC 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 7, 318
PspPI GGNCC 1 cut(s) 577
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 3 cut(s) 75, 228, 528
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 1 cut(s) 577
SduI GDGCHC 1 cut(s) 140
SetI ASST 9 cut(s) 198, 234, 239, 330, 338, 348, 423, 524, 650
SfcI CTRYAG 2 cut(s) 238, 281
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 2 cut(s) 224, 555
SsiI CCGC 1 cut(s) 307
SspMI CTAG 2 cut(s) 66, 461
TaaI ACNGT 4 cut(s) 118, 178, 242, 285
TaiI ACGT 2 cut(s) 330, 650
TaqI TCGA 1 cut(s) 378
TasI AATT 2 cut(s) 224, 555
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 107, 143, 550
Tru1I TTAA 3 cut(s) 75, 228, 528
Tru9I TTAA 3 cut(s) 75, 228, 528
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 138, 405
TspRI CASTG 1 cut(s) 247
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 301
XspI CTAG 2 cut(s) 66, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.