Rmu_sc0004301.1_g000015

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004301.1
OG0000290
Physical Location & Seq
Reverse (-)
92564 .. 94128
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004301.1_g000015.1.cds

Sequence Viewer

Length: 759 bp
atgtacaaggtcttggtcaagaaagctttgggaaaaaagtttaaagtgacatacaccgacacgggcaatctaaatggatcaataaggcacactctacagtcttatataggaatgttggcgcggactaaggtgcccatcaacattgtaagctggcccgacgtggacggtgacttgaaggataaactttggctcgatgttaaggatacattcaaggtcgcccctgaaagtaagaaactggtattgacatctgctggcactaaatggagagcattcaagaccatgttaacaagaaaatatgtgctcccatacttgggaaagaagaagaagttgagaaagccaccaagtcaatatgcatttgttaggaggcaggcatggaggcaatttgtgaaagagaggactatcgagaaatggttggatgatttgttggagaagaaaagtaagggtgagcttgagatttcagggagtagtgatgttctttctcaagcattagaaactcctgaacactcgggtagggtgaggggtgttggaggcttcatcaatccctccatatactttaaacttccgaagctgaaaaggattagaattactaaggcagacttactagcacgtgatagagagttggaggagacaaagaaaatgttcactgcaaagcaagcaaaggcagaagagctcttaaataaaaggattgttgcattgttggagctgaggaaacaatattggaacacgatttcgttattgttttgtggttgttggagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

252

Amino Acids

29.22

Weight (kDa)

10.12

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccII CGCG 1 cut(s) 121
AciI CCGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 85
AcvI CACGTG 1 cut(s) 608
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 310, 311
AgsI TTSAA 3 cut(s) 175, 211, 274
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 6 cut(s) 26, 150, 448, 568, 670, 703
AluI AGCT 6 cut(s) 26, 150, 448, 568, 670, 703
Alw21I GWGCWC 2 cut(s) 303, 672
Alw26I GTCTC 1 cut(s) 620
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 179, 455, 526
AvaI CYCGRG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 672
BbrPI CACGTG 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 303, 672
BbvCI CCTCAGC 1 cut(s) 704
BccI CCATC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 465, 470
BsaAI YACGTR 1 cut(s) 608
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 311
Bse1I ACTGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 2 cut(s) 310, 311
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 303, 672
BsiHKCI CYCGRG 1 cut(s) 505
BslI CCNNNNNNNGG 2 cut(s) 310, 311
BsmAI GTCTC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 135, 303, 672
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 240
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 99, 167
Bst6I CTCTTC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 4 cut(s) 152, 253, 369, 654
BstDEI CTNAG 3 cut(s) 126, 588, 704
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 154
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 4 cut(s) 152, 253, 369, 654
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 280, 372
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 126, 588, 704
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DraI TTTAAA 2 cut(s) 43, 556
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 672
Eco53kI GAGCTC 1 cut(s) 670
Eco72I CACGTG 1 cut(s) 608
Eco88I CYCGRG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 670
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 672
FaeI CATG 2 cut(s) 283, 375
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FatI CATG 2 cut(s) 279, 371
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 672
FspBI CTAG 1 cut(s) 602
GlaI GCGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 154
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 283, 375
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 24
HpaI GTTAAC 1 cut(s) 285
HphI GGTGA 3 cut(s) 179, 455, 526
Hpy166II GTNNAC 3 cut(s) 163, 285, 642
Hpy188I TCNGA 1 cut(s) 564
Hpy188III TCNNGA 4 cut(s) 19, 274, 403, 497
Hpy8I GTNNAC 3 cut(s) 163, 285, 642
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 99, 167
HpyCH4IV ACGT 2 cut(s) 159, 607
HpyCH4V TGCA 3 cut(s) 353, 647, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 3 cut(s) 126, 588, 704
HpySE526I ACGT 2 cut(s) 159, 607
Hsp92II CATG 2 cut(s) 283, 375
HspAI GCGC 1 cut(s) 119
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 2 cut(s) 306, 700
LpnPI CCDG 7 cut(s) 136, 221, 234, 237, 353, 444, 510
MaeI CTAG 1 cut(s) 602
MaeII ACGT 2 cut(s) 159, 607
MaeIII GTNAC 2 cut(s) 46, 167
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 4 cut(s) 331, 334, 442, 677
MhlI GDGCHC 3 cut(s) 135, 303, 672
MluCI AATT 2 cut(s) 380, 582
MmeI TCCRAC 6 cut(s) 393, 405, 505, 600, 678, 731
MnlI CCTC 8 cut(s) 357, 369, 387, 510, 521, 553, 616, 699
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 5 cut(s) 42, 198, 284, 555, 674
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 653
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 283, 375
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 46, 167
NsiI ATGCAT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 638
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 672
PspCI CACGTG 1 cut(s) 608
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 153
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 672
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 5 cut(s) 42, 198, 284, 555, 674
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 153
SduI GDGCHC 3 cut(s) 135, 303, 672
SfcI CTRYAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 449, 480
SmoI CTYRAG 2 cut(s) 449, 480
Sse9I AATT 2 cut(s) 380, 582
SsiI CCGC 1 cut(s) 121
SspI AATATT 1 cut(s) 716
SspMI CTAG 1 cut(s) 602
SstI GAGCTC 1 cut(s) 672
TaaI ACNGT 2 cut(s) 99, 167
TaiI ACGT 2 cut(s) 162, 610
TaqI TCGA 2 cut(s) 192, 402
TasI AATT 2 cut(s) 380, 582
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 5 cut(s) 42, 198, 284, 555, 674
Tru9I TTAA 5 cut(s) 42, 198, 284, 555, 674
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 2 cut(s) 46, 167
Tsp45I GTSAC 2 cut(s) 46, 167
TspDTI ATGAA 1 cut(s) 523
TspRI CASTG 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.