Rmu_sc0003170.1_g000021

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003170.1
OG0000290
Physical Location & Seq
Reverse (-)
57580 .. 62285
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003170.1_g000021.1.cds

Sequence Viewer

Length: 636 bp
atgtcgatatctaaagaagtgtttggcgaacccacgcaactctttatcttgtctgagaatgtgattaatctgttggagatgcagtggattggccaaggagttatagcagcatatgaggggtacttgcatgaacttattactgaaagggaccttttggacacctttgcttttgttgatccggcagctacatataattgtcaaagaccggactttgtgcggtacttagttgatcggttaaaagagggaaaatctgatcgtattttctttatgccttacaatccggggcagcattggatattaactatcctatgggaaggtgaaatctacatgttggatccgttgccaaaaccagtccattacaaagaatgggagacctcggtgatgaatgcggtgaaaaccttcaatgctgaaactggaagggtcaacaaactgcctaaagtaaaaccgcttccggagagcaccaacctcgccacaggattcttctctaacctttcgggaaaggacttttgccttacggataaggactttgggtgtgatcttttcgatcaccaaatcgatactcaaagttgtaggttgagcatagcaatcactgggaagttctgggaaagcacggggtttgctaaagtgtatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

211

Amino Acids

24.24

Weight (kDa)

5.03

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 3 cut(s) 217, 389, 446
AclWI GGATC 3 cut(s) 170, 329, 342
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 122, 221
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 170, 329, 342
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 107, 182, 286
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 4 cut(s) 329, 391, 403, 539
AvaII GGWCC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 93
BamHI GGATCC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 3 cut(s) 119, 194, 298
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 365
BisI GCNGC 3 cut(s) 108, 183, 287
BlsI GCNGC 3 cut(s) 109, 184, 288
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 149, 336
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 94, 281, 375
BsaWI WCCGGW 2 cut(s) 205, 451
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse1I ACTGG 3 cut(s) 350, 418, 595
BseAI TCCGGA 1 cut(s) 451
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 94, 281, 375
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 350, 418, 595
BseXI GCAGC 3 cut(s) 119, 194, 298
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 4 cut(s) 179, 206, 281, 452
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 6 cut(s) 175, 229, 253, 334, 535, 544
BspACI CCGC 3 cut(s) 217, 389, 446
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 46
BspDI ATCGAT 1 cut(s) 555
BspEI TCCGGA 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 149, 336
BspPI GGATC 3 cut(s) 170, 329, 342
BspTNI GGTCTC 1 cut(s) 365
BsrI ACTGG 3 cut(s) 350, 418, 595
BssECI CCNNGG 3 cut(s) 94, 281, 375
BssMI GATC 6 cut(s) 175, 229, 253, 334, 535, 544
BssT1I CCWWGG 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 54, 223
BstKTI GATC 6 cut(s) 178, 232, 256, 337, 538, 547
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 6 cut(s) 175, 229, 253, 334, 535, 544
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 119, 194, 298
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 555
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 588
Cfr13I GGNCC 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 121, 220
CviAII CATG 2 cut(s) 128, 328
CviJI RGCY 2 cut(s) 93, 185
CviKI_1 RGCY 2 cut(s) 93, 185
CviQI GTAC 2 cut(s) 121, 220
DdeI CTNAG 2 cut(s) 54, 223
DpnI GATC 6 cut(s) 177, 231, 255, 336, 537, 546
DpnII GATC 6 cut(s) 175, 229, 253, 334, 535, 544
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 365
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 131, 331
FalI AAGNNNNNCTT 1 cut(s) 615
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 127, 327
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 108, 183, 287
Fsp4HI GCNGC 3 cut(s) 108, 183, 287
GluI GCNGC 3 cut(s) 108, 183, 287
HaeIII GGCC 1 cut(s) 93
HapII CCGG 4 cut(s) 179, 206, 281, 452
Hin1II CATG 2 cut(s) 131, 331
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 477
HpaII CCGG 4 cut(s) 179, 206, 281, 452
HphI GGTGA 4 cut(s) 329, 391, 403, 539
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 55, 253
Hpy188III TCNNGA 2 cut(s) 452, 495
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 3 cut(s) 308, 409, 411
HpyCH4V TGCA 2 cut(s) 82, 127
HpyF3I CTNAG 2 cut(s) 54, 223
Hsp92II CATG 2 cut(s) 131, 331
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 6 cut(s) 175, 229, 253, 334, 535, 544
LpnPI CCDG 9 cut(s) 192, 219, 294, 363, 399, 459, 465, 576, 586
Lsp1109I GCAGC 3 cut(s) 119, 194, 298
LweI GCATC 1 cut(s) 69
MalI GATC 6 cut(s) 177, 231, 255, 336, 537, 546
MboI GATC 6 cut(s) 175, 229, 253, 334, 535, 544
MboII GAAGA 1 cut(s) 472
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 54, 312
MnlI CCTC 4 cut(s) 109, 235, 385, 476
Mox20I TGGCCA 1 cut(s) 93
MroI TCCGGA 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 93
MseI TTAA 3 cut(s) 66, 236, 299
Msp20I TGGCCA 1 cut(s) 93
MspI CCGG 4 cut(s) 179, 206, 281, 452
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 282
NdeI CATATG 1 cut(s) 112
NdeII GATC 6 cut(s) 175, 229, 253, 334, 535, 544
NlaIII CATG 2 cut(s) 131, 331
NlaIV GGNNCC 2 cut(s) 149, 336
NspI RCATGY 1 cut(s) 331
PciI ACATGT 1 cut(s) 327
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 3 cut(s) 109, 184, 288
PpuMI RGGWCCY 1 cut(s) 148
PscI ACATGT 1 cut(s) 327
PshBI ATTAAT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 149, 336
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 122, 221
RsaNI GTAC 2 cut(s) 121, 220
SaqAI TTAA 3 cut(s) 66, 236, 299
SatI GCNGC 3 cut(s) 108, 183, 287
Sau3AI GATC 6 cut(s) 175, 229, 253, 334, 535, 544
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 461
SetI ASST 9 cut(s) 153, 164, 187, 319, 377, 401, 468, 492, 575
SfaNI GCATC 1 cut(s) 69
SinI GGWCC 1 cut(s) 148
Sse9I AATT 1 cut(s) 193
SsiI CCGC 3 cut(s) 217, 389, 446
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 3 cut(s) 5, 543, 555
TasI AATT 1 cut(s) 193
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 3 cut(s) 66, 236, 299
Tru9I TTAA 3 cut(s) 66, 236, 299
TscAI CASTG 2 cut(s) 89, 595
TseI GCWGC 3 cut(s) 107, 182, 286
TspDTI ATGAA 2 cut(s) 144, 398
TspGWI ACGGA 2 cut(s) 327, 530
TspRI CASTG 2 cut(s) 89, 595
VpaK11BI GGWCC 1 cut(s) 148
VspI ATTAAT 1 cut(s) 66
XceI RCATGY 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.