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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 403 |
| AccII | CGCG | 1 cut(s) | 120 |
| AciI | CCGC | 1 cut(s) | 120 |
| AcsI | RAATTY | 1 cut(s) | 167 |
| AcuI | CTGAAG | 1 cut(s) | 425 |
| AfaI | GTAC | 4 cut(s) | 234, 324, 533, 550 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 403 |
| AgsI | TTSAA | 5 cut(s) | 80, 172, 253, 338, 376 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 368, 400 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| Alw26I | GTCTC | 2 cut(s) | 140, 196 |
| ApeKI | GCWGC | 1 cut(s) | 65 |
| ApoI | RAATTY | 1 cut(s) | 167 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 1 cut(s) | 168 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 515, 547 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BcoDI | GTCTC | 2 cut(s) | 140, 196 |
| BfaI | CTAG | 2 cut(s) | 210, 240 |
| BisI | GCNGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 1 cut(s) | 67 |
| BmcAI | AGTACT | 1 cut(s) | 550 |
| BmsI | GCATC | 2 cut(s) | 196, 252 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 403 |
| Bse1I | ACTGG | 2 cut(s) | 210, 417 |
| BseGI | GGATG | 2 cut(s) | 187, 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BseNI | ACTGG | 2 cut(s) | 210, 417 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BsgI | GTGCAG | 1 cut(s) | 497 |
| Bsh1236I | CGCG | 1 cut(s) | 120 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BsmAI | GTCTC | 2 cut(s) | 140, 196 |
| Bsp143I | GATC | 1 cut(s) | 449 |
| BspACI | CCGC | 1 cut(s) | 120 |
| BspFNI | CGCG | 1 cut(s) | 120 |
| BspHI | TCATGA | 1 cut(s) | 99 |
| BsrI | ACTGG | 2 cut(s) | 210, 417 |
| BssMI | GATC | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 2 cut(s) | 195, 536 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 1 cut(s) | 552 |
| BstF5I | GGATG | 2 cut(s) | 187, 364 |
| BstFNI | CGCG | 1 cut(s) | 120 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstKTI | GATC | 1 cut(s) | 452 |
| BstMAI | GTCTC | 2 cut(s) | 140, 196 |
| BstMBI | GATC | 1 cut(s) | 449 |
| BstNSI | RCATGY | 2 cut(s) | 159, 295 |
| BstUI | CGCG | 1 cut(s) | 120 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 205 |
| BtsCI | GGATG | 2 cut(s) | 187, 364 |
| Cac8I | GCNNGC | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 99 |
| CfoI | GCGC | 1 cut(s) | 120 |
| Csp6I | GTAC | 4 cut(s) | 233, 323, 532, 549 |
| CviAII | CATG | 6 cut(s) | 100, 156, 199, 268, 292, 398 |
| CviJI | RGCY | 2 cut(s) | 68, 209 |
| CviKI_1 | RGCY | 2 cut(s) | 68, 209 |
| CviQI | GTAC | 4 cut(s) | 233, 323, 532, 549 |
| DdeI | CTNAG | 1 cut(s) | 552 |
| DpnI | GATC | 1 cut(s) | 451 |
| DpnII | GATC | 1 cut(s) | 449 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco57I | CTGAAG | 1 cut(s) | 425 |
| EcoRI | GAATTC | 1 cut(s) | 167 |
| FaeI | CATG | 6 cut(s) | 103, 159, 202, 271, 295, 401 |
| FatI | CATG | 6 cut(s) | 99, 155, 198, 267, 291, 397 |
| FauNDI | CATATG | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 1 cut(s) | 66 |
| FokI | GGATG | 2 cut(s) | 174, 371 |
| Fsp4HI | GCNGC | 1 cut(s) | 66 |
| FspBI | CTAG | 2 cut(s) | 210, 240 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GluI | GCNGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1II | CATG | 6 cut(s) | 103, 159, 202, 271, 295, 401 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HphI | GGTGA | 1 cut(s) | 168 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 1 cut(s) | 100 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| HpyAV | CCTTC | 2 cut(s) | 496, 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 195, 536 |
| HpyCH4IV | ACGT | 1 cut(s) | 75 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 187, 291, 478 |
| HpyF3I | CTNAG | 1 cut(s) | 552 |
| HpySE526I | ACGT | 1 cut(s) | 75 |
| Hsp92II | CATG | 6 cut(s) | 103, 159, 202, 271, 295, 401 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Kzo9I | GATC | 1 cut(s) | 449 |
| LpnPI | CCDG | 4 cut(s) | 191, 192, 240, 398 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| LweI | GCATC | 2 cut(s) | 196, 252 |
| MaeI | CTAG | 2 cut(s) | 210, 240 |
| MaeII | ACGT | 1 cut(s) | 75 |
| MaeIII | GTNAC | 4 cut(s) | 158, 262, 378, 507 |
| MalI | GATC | 1 cut(s) | 451 |
| MboI | GATC | 1 cut(s) | 449 |
| MboII | GAAGA | 7 cut(s) | 28, 28, 227, 350, 419, 428, 431 |
| MluCI | AATT | 4 cut(s) | 25, 167, 172, 420 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| MslI | CAYNNNNRTG | 1 cut(s) | 290 |
| MvnI | CGCG | 1 cut(s) | 120 |
| NdeI | CATATG | 1 cut(s) | 49 |
| NdeII | GATC | 1 cut(s) | 449 |
| NlaIII | CATG | 6 cut(s) | 103, 159, 202, 271, 295, 401 |
| NmuCI | GTSAC | 3 cut(s) | 262, 378, 507 |
| NspI | RCATGY | 2 cut(s) | 159, 295 |
| PaeI | GCATGC | 1 cut(s) | 295 |
| PagI | TCATGA | 1 cut(s) | 99 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 403 |
| PkrI | GCNGC | 1 cut(s) | 67 |
| RsaI | GTAC | 4 cut(s) | 234, 324, 533, 550 |
| RsaNI | GTAC | 4 cut(s) | 233, 323, 532, 549 |
| RseI | CAYNNNNRTG | 1 cut(s) | 290 |
| SatI | GCNGC | 1 cut(s) | 66 |
| Sau3AI | GATC | 1 cut(s) | 449 |
| ScaI | AGTACT | 1 cut(s) | 550 |
| SetI | ASST | 5 cut(s) | 70, 78, 181, 507, 528 |
| SfaNI | GCATC | 2 cut(s) | 196, 252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 290 |
| SphI | GCATGC | 1 cut(s) | 295 |
| Sse9I | AATT | 4 cut(s) | 25, 167, 172, 420 |
| SsiI | CCGC | 1 cut(s) | 120 |
| SspI | AATATT | 2 cut(s) | 495, 516 |
| SspMI | CTAG | 2 cut(s) | 210, 240 |
| TaaI | ACNGT | 2 cut(s) | 195, 536 |
| TaiI | ACGT | 1 cut(s) | 78 |
| TaqI | TCGA | 1 cut(s) | 301 |
| TasI | AATT | 4 cut(s) | 25, 167, 172, 420 |
| TatI | WGTACW | 3 cut(s) | 232, 531, 548 |
| TseFI | GTSAC | 3 cut(s) | 262, 378, 507 |
| TseI | GCWGC | 1 cut(s) | 65 |
| Tsp45I | GTSAC | 3 cut(s) | 262, 378, 507 |
| TspDTI | ATGAA | 1 cut(s) | 18 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 403 |
| XapI | RAATTY | 1 cut(s) | 167 |
| XceI | RCATGY | 2 cut(s) | 159, 295 |
| XspI | CTAG | 2 cut(s) | 210, 240 |
| ZrmI | AGTACT | 1 cut(s) | 550 |