Rmu_sc0006888.1_g000057

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006888.1
OG0000290
Physical Location & Seq
Forward (+)
242499 .. 244517
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006888.1_g000057.1.cds

Sequence Viewer

Length: 582 bp
ctgagaagcagaggaggagcggagctcggagagggagtaagagatagtgagatacctagagcctggaggaggagctcggagactgcagaggcggactggcgaagacggattgctggttgtagccttgcaggttgctgtgtttggtgttccatcttcctcgttcaggtcgggactcgggagtgctccaattctccaactgagttcagcggagaggcaattgatcatgcaattatgtggaagaaagctcgtataccaaaaaatggaaagatagatgaagaactctcattgggggcagcaaaaatagatgaactattggagaagaagagtaaaggtgagttggaaatctcagggagtagtgatgtcctgtctcgagctatagacactcctgaacactcgggtagggtgaggggtgttggaggcttcgtcaacccatcctcctactttaatttgccaaagcagaaaaggattcaaattactaaggcagatatattggcccgtgataaggagcgtgataaagagttggaggacacaaagaaaaagcttcttgcgcagcaagcaaagacggaagcgatgttatattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

193

Amino Acids

21.43

Weight (kDa)

8.8

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 250
AciI CCGC 3 cut(s) 20, 92, 207
AfiI CCNNNNNNNGG 4 cut(s) 69, 163, 260, 502
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 5 cut(s) 25, 75, 245, 374, 541
AluI AGCT 5 cut(s) 25, 75, 245, 374, 541
Alw21I GWGCWC 3 cut(s) 27, 77, 185
Alw26I GTCTC 2 cut(s) 74, 372
Ama87I CYCGRG 3 cut(s) 174, 369, 394
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 293, 550
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 344, 415
AvaI CYCGRG 3 cut(s) 174, 369, 394
BanII GRGCYC 2 cut(s) 27, 77
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 3 cut(s) 27, 77, 185
BbvI GCAGC 2 cut(s) 305, 562
BccI CCATC 2 cut(s) 158, 439
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 74, 372
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 84, 375
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 294, 551
BlsI GCNGC 2 cut(s) 295, 552
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 3 cut(s) 174, 369, 394
BmgT120I GGNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 1 cut(s) 85
BsaXI ACNNNNNCTCC 6 cut(s) 21, 51, 408, 419, 438, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 163, 260, 502
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 4 cut(s) 69, 163, 260, 502
BseMII CTCAG 2 cut(s) 189, 360
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 4 cut(s) 27, 30, 82, 85
BseXI GCAGC 2 cut(s) 305, 562
BshFI GGCC 1 cut(s) 494
BsiHKAI GWGCWC 3 cut(s) 27, 77, 185
BsiHKCI CYCGRG 3 cut(s) 174, 369, 394
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 4 cut(s) 69, 163, 260, 502
BsmAI GTCTC 2 cut(s) 74, 372
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 494
BsoBI CYCGRG 3 cut(s) 174, 369, 394
Bsp1286I GDGCHC 3 cut(s) 27, 77, 185
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 3 cut(s) 20, 92, 207
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 190, 359
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 220
BssNAI GTATAC 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 4 cut(s) 2, 198, 346, 477
BstENI CCTNNNNNAGG 2 cut(s) 67, 161
BstF5I GGATG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 74, 372
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 547, 554
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 2 cut(s) 84, 375
BstV1I GCAGC 2 cut(s) 305, 562
BstV2I GAAGAC 1 cut(s) 109
BstZ17I GTATAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 431
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 555
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 493
CviAII CATG 1 cut(s) 224
CviJI RGCY 9 cut(s) 25, 62, 75, 123, 245, 374, 420, 494, 541
CviKI_1 RGCY 9 cut(s) 25, 62, 75, 123, 245, 374, 420, 494, 541
DdeI CTNAG 4 cut(s) 2, 198, 346, 477
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 2 cut(s) 25, 75
Eco24I GRGCYC 2 cut(s) 27, 77
Eco53kI GAGCTC 2 cut(s) 25, 75
Eco88I CYCGRG 3 cut(s) 174, 369, 394
EcoICRI GAGCTC 2 cut(s) 25, 75
EcoNI CCTNNNNNAGG 2 cut(s) 67, 161
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 2 cut(s) 27, 77
FaeI CATG 1 cut(s) 227
FaiI YATR 6 cut(s) 225, 233, 251, 377, 488, 577
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 294, 551
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 2 cut(s) 27, 77
Fsp4HI GCNGC 2 cut(s) 294, 551
FspBI CTAG 1 cut(s) 57
FspI TGCGCA 1 cut(s) 549
GlaI GCGC 1 cut(s) 549
GluI GCNGC 2 cut(s) 294, 551
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 1 cut(s) 494
HhaI GCGC 1 cut(s) 550
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 2 cut(s) 172, 466
HphI GGTGA 2 cut(s) 344, 415
Hpy166II GTNNAC 2 cut(s) 251, 427
Hpy188I TCNGA 2 cut(s) 29, 79
Hpy188III TCNNGA 4 cut(s) 169, 176, 369, 386
Hpy8I GTNNAC 2 cut(s) 251, 427
HpyCH4V TGCA 3 cut(s) 86, 128, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 554
HpyF3I CTNAG 4 cut(s) 2, 198, 346, 477
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 5 cut(s) 17, 22, 72, 188, 505
LpnPI CCDG 9 cut(s) 49, 76, 82, 99, 114, 149, 333, 377, 399
Lsp1109I GCAGC 2 cut(s) 305, 562
MaeI CTAG 1 cut(s) 57
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 220
MboII GAAGA 6 cut(s) 114, 145, 250, 287, 331, 334
MfeI CAATTG 1 cut(s) 216
MhlI GDGCHC 3 cut(s) 27, 77, 185
MluCI AATT 5 cut(s) 187, 216, 228, 445, 471
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 4 cut(s) 218, 318, 394, 501
MseI TTAA 2 cut(s) 444, 580
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 547, 554
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 227
NsbI TGCGCA 1 cut(s) 549
PaeR7I CTCGAG 1 cut(s) 369
PfeI GAWTC 1 cut(s) 466
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 2 cut(s) 295, 552
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 2 cut(s) 27, 77
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 493
PstI CTGCAG 1 cut(s) 88
SacI GAGCTC 2 cut(s) 27, 77
SaqAI TTAA 2 cut(s) 444, 580
SatI GCNGC 2 cut(s) 294, 551
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 493
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 3 cut(s) 27, 77, 185
SetI ASST 9 cut(s) 27, 58, 77, 133, 168, 247, 334, 376, 543
SfcI CTRYAG 2 cut(s) 84, 375
Sfr274I CTCGAG 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 5 cut(s) 187, 216, 228, 445, 471
SsiI CCGC 3 cut(s) 20, 92, 207
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 2 cut(s) 27, 77
StyD4I CCNGG 1 cut(s) 62
TaqI TCGA 1 cut(s) 370
TasI AATT 5 cut(s) 187, 216, 228, 445, 471
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 2 cut(s) 444, 580
Tru9I TTAA 2 cut(s) 444, 580
TseI GCWGC 2 cut(s) 293, 550
TspDTI ATGAA 2 cut(s) 288, 321
TspGWI ACGGA 2 cut(s) 121, 578
Van91I CCANNNNNTGG 1 cut(s) 260
XagI CCTNNNNNAGG 2 cut(s) 67, 161
XhoI CTCGAG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.