Rh6DG062500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000290
Physical Location & Seq
Forward (+)
6400895 .. 6401176
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG062500.1

Sequence Viewer

Length: 282 bp
ATGGGTTCCAAGAAGGGAATTCGCAAATCTCCTAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTCTGTATCAGCCAACACTGTCATGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTGGTTGCCATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTGACATACACCGACACGGGCAATCCAAATGGATCAATAAGGCACACTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

9.95

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 18
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 152, 209
AluI AGCT 2 cut(s) 152, 209
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 62, 77
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 152, 155
ApoI RAATTY 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 139, 142
BcoDI GTCTC 2 cut(s) 62, 77
BfaI CTAG 2 cut(s) 33, 159
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
BmiI GGNNCC 1 cut(s) 7
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 139, 142
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 62, 77
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 186
BssMI GATC 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 2 cut(s) 62, 77
BstMBI GATC 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 139, 142
BtsIMutI CAGTG 2 cut(s) 129, 141
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 135
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 136, 184
CviJI RGCY 3 cut(s) 125, 152, 209
CviKI_1 RGCY 3 cut(s) 125, 152, 209
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
DraI TTTAAA 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 18
FaeI CATG 2 cut(s) 139, 187
FaiI YATR 4 cut(s) 137, 185, 235, 280
FalI AAGNNNNNCTT 1 cut(s) 259
FatI CATG 2 cut(s) 135, 183
Fnu4HI GCNGC 2 cut(s) 153, 156
Fsp4HI GCNGC 2 cut(s) 153, 156
FspBI CTAG 2 cut(s) 33, 159
GluI GCNGC 2 cut(s) 153, 156
Hin1II CATG 2 cut(s) 139, 187
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 113, 146
Hpy188III TCNNGA 2 cut(s) 136, 202
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 2 cut(s) 139, 187
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 139, 142
MaeI CTAG 2 cut(s) 33, 159
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 18
MnlI CCTC 3 cut(s) 29, 58, 155
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 152
NdeII GATC 1 cut(s) 260
NlaIII CATG 2 cut(s) 139, 187
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 229
PagI TCATGA 1 cut(s) 135
PfeI GAWTC 2 cut(s) 113, 146
PkrI GCNGC 2 cut(s) 154, 157
PspN4I GGNNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 82, 154, 195, 211
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 18
SspMI CTAG 2 cut(s) 33, 159
TaaI ACNGT 1 cut(s) 133
TasI AATT 1 cut(s) 18
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 113, 146
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 136, 148
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 152, 155
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 136, 148
XapI RAATTY 1 cut(s) 18
XspI CTAG 2 cut(s) 33, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.