RchiOBHm_Chr2g0160781

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000290
Physical Location & Seq
Forward (+)
76663342 .. 76664499
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52920

Sequence Viewer

Length: 519 bp
ATGGGTGGCACATGTGAGTTAGCAGTGGACACCATTAGCAACATAGTTGCTTTTGGTACTGTTTTTGATGAAGAGGATGTCAGTAGGGTGATACATGGAGTTCCAATGAAGGAGGGGTGTGTTAGGGTGTCTGTGGATGGTGCCATTCAAGAGGAAGCACGACTTCCTTTCCCAGTGGGTGATGAGATGGAATTGGTTGGCCAAGCTGTTGGAAGTCATGTGGCTTGGCCTGAAGAGCTTGTTATTCGAAGAGTGAATAAGAAAAAGAAAAGAAAGATGGATTTTGTCAAACAACTGTTTGACAAAGCTGAGCTAAACCCGTTTGTGCCCAAGCGTTGTAAGTTGTTGTACAAGCATGCCAAGACTATTATGAGCCAAACCAATGAGTCGATAAGGACAATGTTGGATGATAGTGTCTTTGGGGTACAGAAACAGCTCTTCATATTGACTGAGAATGTCATTGATCTCTTAGAAATGAATAAGATTGGCCAAGGAGTGATAGCAGCATATATGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

172

Amino Acids

19.23

Weight (kDa)

5.96

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 4 - 82 3.4e-15 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AcoI YGGCCR 2 cut(s) 199, 487
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 3 cut(s) 58, 350, 426
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 5 cut(s) 206, 238, 308, 313, 436
AluI AGCT 5 cut(s) 206, 238, 308, 313, 436
AoxI GGCC 3 cut(s) 199, 227, 487
ApeKI GCWGC 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 100, 191
AsuII TTCGAA 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 2 cut(s) 201, 489
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 515
BccI CCATC 3 cut(s) 131, 181, 271
BisI GCNGC 1 cut(s) 504
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 3 cut(s) 82, 142, 412
BseMII CTCAG 2 cut(s) 300, 441
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 515
BshFI GGCC 3 cut(s) 201, 229, 489
BshNI GGYRCC 1 cut(s) 140
BsnI GGCC 3 cut(s) 201, 229, 489
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 1 cut(s) 463
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 3 cut(s) 201, 229, 489
BspCNI CTCAG 2 cut(s) 301, 442
BspLI GGNNCC 1 cut(s) 142
BspQI GCTCTTC 2 cut(s) 228, 443
BspT104I TTCGAA 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 61, 297
Bst6I CTCTTC 4 cut(s) 66, 228, 244, 443
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 309, 450, 469
BstF5I GGATG 3 cut(s) 82, 142, 412
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 2 cut(s) 235, 512
BstNSI RCATGY 2 cut(s) 15, 359
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 515
BstXI CCANNNNNNTGG 1 cut(s) 209
BsuRI GGCC 3 cut(s) 201, 229, 489
BtsCI GGATG 3 cut(s) 82, 142, 412
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 180
Cac8I GCNNGC 1 cut(s) 357
Csp6I GTAC 3 cut(s) 57, 349, 425
CviAII CATG 4 cut(s) 12, 95, 218, 356
CviQI GTAC 3 cut(s) 57, 349, 425
DdeI CTNAG 3 cut(s) 309, 450, 469
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 199, 487
Eam1104I CTCTTC 4 cut(s) 66, 228, 244, 443
EarI CTCTTC 4 cut(s) 66, 228, 244, 443
Eco130I CCWWGG 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 4 cut(s) 15, 98, 221, 359
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 4 cut(s) 11, 94, 217, 355
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 3 cut(s) 89, 149, 419
Fsp4HI GCNGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 504
HaeIII GGCC 3 cut(s) 201, 229, 489
Hin1II CATG 4 cut(s) 15, 98, 221, 359
HinfI GANTC 1 cut(s) 386
HphI GGTGA 2 cut(s) 100, 191
Hpy166II GTNNAC 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 61, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 512
HpyF3I CTNAG 3 cut(s) 309, 450, 469
Hsp92II CATG 4 cut(s) 15, 98, 221, 359
Kzo9I GATC 1 cut(s) 463
LguI GCTCTTC 2 cut(s) 228, 443
LpnPI CCDG 2 cut(s) 186, 243
Lsp1109I GCAGC 1 cut(s) 515
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 4 cut(s) 83, 245, 261, 430
MhlI GDGCHC 1 cut(s) 330
MlsI TGGCCA 2 cut(s) 201, 489
MluCI AATT 1 cut(s) 191
MluNI TGGCCA 2 cut(s) 201, 489
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 190, 384
MnlI CCTC 3 cut(s) 67, 106, 145
Mox20I TGGCCA 2 cut(s) 201, 489
MscI TGGCCA 2 cut(s) 201, 489
Msp20I TGGCCA 2 cut(s) 201, 489
MwoI GCNNNNNNNGC 2 cut(s) 235, 512
NdeII GATC 1 cut(s) 463
NlaIII CATG 4 cut(s) 15, 98, 221, 359
NlaIV GGNNCC 1 cut(s) 142
NspI RCATGY 2 cut(s) 15, 359
NspV TTCGAA 1 cut(s) 247
PaeI GCATGC 1 cut(s) 359
PciI ACATGT 1 cut(s) 11
PciSI GCTCTTC 2 cut(s) 228, 443
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 142
RsaI GTAC 3 cut(s) 58, 350, 426
RsaNI GTAC 3 cut(s) 57, 349, 425
SapI GCTCTTC 2 cut(s) 228, 443
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 1 cut(s) 463
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 208, 240, 310, 315, 438
SfuI TTCGAA 1 cut(s) 247
SphI GCATGC 1 cut(s) 359
Sse9I AATT 1 cut(s) 191
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 61, 297
TaqI TCGA 2 cut(s) 247, 389
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 348
TscAI CASTG 2 cut(s) 30, 180
TseI GCWGC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 84, 122, 430, 491
TspRI CASTG 2 cut(s) 30, 180
XceI RCATGY 2 cut(s) 15, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.