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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 656 |
| Acc36I | ACCTGC | 1 cut(s) | 656 |
| AccB1I | GGYRCC | 1 cut(s) | 551 |
| AciI | CCGC | 2 cut(s) | 784, 1686 |
| AclWI | GGATC | 3 cut(s) | 1175, 1189, 1577 |
| AcsI | RAATTY | 2 cut(s) | 132, 787 |
| AcuI | CTGAAG | 1 cut(s) | 1545 |
| AfaI | GTAC | 4 cut(s) | 47, 221, 849, 1349 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 307, 308, 1396, 1671, 1672 |
| AflIII | ACRYGT | 1 cut(s) | 919 |
| AgsI | TTSAA | 7 cut(s) | 70, 597, 959, 1371, 1444, 1504, 1733 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1385 |
| AhlI | ACTAGT | 1 cut(s) | 1195 |
| AluBI | AGCT | 7 cut(s) | 368, 409, 889, 911, 1313, 1565, 1753 |
| AluI | AGCT | 7 cut(s) | 368, 409, 889, 911, 1313, 1565, 1753 |
| Alw21I | GWGCWC | 1 cut(s) | 1465 |
| Alw26I | GTCTC | 7 cut(s) | 250, 536, 636, 1148, 1342, 1592, 1749 |
| AlwI | GGATC | 3 cut(s) | 1175, 1189, 1577 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 371 |
| AoxI | GGCC | 2 cut(s) | 1326, 1662 |
| ApeKI | GCWGC | 4 cut(s) | 716, 896, 951, 1271 |
| ApoI | RAATTY | 2 cut(s) | 132, 787 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1423, 1455, 1591, 1623 |
| AseI | ATTAAT | 1 cut(s) | 1575 |
| AspA2I | CCTAGG | 1 cut(s) | 1025 |
| AspS9I | GGNCC | 3 cut(s) | 1451, 1493, 1663 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| AvaII | GGWCC | 2 cut(s) | 1451, 1493 |
| AvrII | CCTAGG | 1 cut(s) | 1025 |
| BaeGI | GKGCMC | 1 cut(s) | 1636 |
| BanI | GGYRCC | 1 cut(s) | 551 |
| BanII | GRGCYC | 1 cut(s) | 469 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 352, 384 |
| BbsI | GAAGAC | 2 cut(s) | 268, 469 |
| Bbv12I | GWGCWC | 1 cut(s) | 1465 |
| BbvI | GCAGC | 4 cut(s) | 703, 883, 938, 1258 |
| BccI | CCATC | 4 cut(s) | 979, 1056, 1137, 1664 |
| BceAI | ACGGC | 2 cut(s) | 704, 914 |
| BcoDI | GTCTC | 7 cut(s) | 250, 536, 636, 1148, 1342, 1592, 1749 |
| BcuI | ACTAGT | 1 cut(s) | 1195 |
| BfaI | CTAG | 6 cut(s) | 137, 861, 1026, 1097, 1158, 1196 |
| BfmI | CTRYAG | 2 cut(s) | 897, 912 |
| BfuAI | ACCTGC | 1 cut(s) | 656 |
| BisI | GCNGC | 4 cut(s) | 717, 897, 952, 1272 |
| BlnI | CCTAGG | 1 cut(s) | 1025 |
| BlsI | GCNGC | 4 cut(s) | 718, 898, 953, 1273 |
| Bme18I | GGWCC | 2 cut(s) | 1451, 1493 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1385 |
| BmgT120I | GGNCC | 3 cut(s) | 1451, 1493, 1663 |
| BmiI | GGNNCC | 3 cut(s) | 466, 553, 1127 |
| BmrI | ACTGGG | 1 cut(s) | 365 |
| BmuI | ACTGGG | 1 cut(s) | 365 |
| BpiI | GAAGAC | 2 cut(s) | 268, 469 |
| BpmI | CTGGAG | 2 cut(s) | 466, 1733 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1314 |
| BpuEI | CTTGAG | 2 cut(s) | 413, 1025 |
| Bsa29I | ATCGAT | 1 cut(s) | 1184 |
| BsaAI | YACGTR | 1 cut(s) | 766 |
| BsaI | GGTCTC | 2 cut(s) | 536, 1749 |
| BsaJI | CCNNGG | 7 cut(s) | 250, 454, 720, 1025, 1262, 1434, 1649 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 307, 308, 1396, 1671, 1672 |
| Bse1I | ACTGG | 3 cut(s) | 360, 483, 1103 |
| Bse3DI | GCAATG | 1 cut(s) | 466 |
| BseCI | ATCGAT | 1 cut(s) | 1184 |
| BseDI | CCNNGG | 7 cut(s) | 250, 454, 720, 1025, 1262, 1434, 1649 |
| BseGI | GGATG | 2 cut(s) | 880, 1115 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 307, 308, 1396, 1671, 1672 |
| BseMI | GCAATG | 1 cut(s) | 466 |
| BseMII | CTCAG | 1 cut(s) | 1328 |
| BseNI | ACTGG | 3 cut(s) | 360, 483, 1103 |
| BseSI | GKGCMC | 1 cut(s) | 1636 |
| BseXI | GCAGC | 4 cut(s) | 703, 883, 938, 1258 |
| BseYI | CCCAGC | 1 cut(s) | 434 |
| BshFI | GGCC | 2 cut(s) | 1328, 1664 |
| BshNI | GGYRCC | 1 cut(s) | 551 |
| BshVI | ATCGAT | 1 cut(s) | 1184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1465 |
| BslFI | GGGAC | 2 cut(s) | 406, 526 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 307, 308, 1396, 1671, 1672 |
| BsmAI | GTCTC | 7 cut(s) | 250, 536, 636, 1148, 1342, 1592, 1749 |
| BsmBI | CGTCTC | 1 cut(s) | 1592 |
| BsmFI | GGGAC | 2 cut(s) | 406, 526 |
| BsmI | GAATGC | 1 cut(s) | 147 |
| BsnI | GGCC | 2 cut(s) | 1328, 1664 |
| Bso31I | GGTCTC | 2 cut(s) | 536, 1749 |
| Bsp1286I | GDGCHC | 3 cut(s) | 469, 1465, 1636 |
| Bsp1407I | TGTACA | 1 cut(s) | 45 |
| Bsp143I | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| Bsp19I | CCATGG | 1 cut(s) | 1434 |
| BspACI | CCGC | 2 cut(s) | 784, 1686 |
| BspANI | GGCC | 2 cut(s) | 1328, 1664 |
| BspCNI | CTCAG | 1 cut(s) | 1327 |
| BspDI | ATCGAT | 1 cut(s) | 1184 |
| BspHI | TCATGA | 2 cut(s) | 835, 855 |
| BspLI | GGNNCC | 3 cut(s) | 466, 553, 1127 |
| BspMAI | CTGCAG | 1 cut(s) | 901 |
| BspMI | ACCTGC | 1 cut(s) | 656 |
| BspPI | GGATC | 3 cut(s) | 1175, 1189, 1577 |
| BspQI | GCTCTTC | 1 cut(s) | 879 |
| BspT107I | GGYRCC | 1 cut(s) | 551 |
| BspTNI | GGTCTC | 2 cut(s) | 536, 1749 |
| BsrDI | GCAATG | 1 cut(s) | 466 |
| BsrGI | TGTACA | 1 cut(s) | 45 |
| BsrI | ACTGG | 3 cut(s) | 360, 483, 1103 |
| BssECI | CCNNGG | 7 cut(s) | 250, 454, 720, 1025, 1262, 1434, 1649 |
| BssMI | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| BssT1I | CCWWGG | 6 cut(s) | 250, 454, 1025, 1262, 1434, 1649 |
| Bst4CI | ACNGT | 7 cut(s) | 182, 541, 815, 830, 847, 1387, 1762 |
| Bst6I | CTCTTC | 4 cut(s) | 130, 450, 736, 879 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1469 |
| BstAUI | TGTACA | 1 cut(s) | 45 |
| BstBAI | YACGTR | 1 cut(s) | 766 |
| BstC8I | GCNNGC | 3 cut(s) | 1269, 1276, 1625 |
| BstDEI | CTNAG | 3 cut(s) | 85, 890, 1314 |
| BstDSI | CCRYGG | 2 cut(s) | 720, 1434 |
| BstF5I | GGATG | 2 cut(s) | 880, 1115 |
| BstKTI | GATC | 4 cut(s) | 687, 1170, 1184, 1585 |
| BstMAI | GTCTC | 7 cut(s) | 250, 536, 636, 1148, 1342, 1592, 1749 |
| BstMBI | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 153, 291, 722, 1469, 1478, 1487 |
| BstNSI | RCATGY | 1 cut(s) | 1218 |
| BstSFI | CTRYAG | 2 cut(s) | 897, 912 |
| BstSLI | GKGCMC | 1 cut(s) | 1636 |
| BstSNI | TACGTA | 1 cut(s) | 766 |
| BstV1I | GCAGC | 4 cut(s) | 703, 883, 938, 1258 |
| BstV2I | GAAGAC | 2 cut(s) | 268, 469 |
| BstX2I | RGATCY | 2 cut(s) | 1167, 1582 |
| BstYI | RGATCY | 2 cut(s) | 1167, 1582 |
| Bsu15I | ATCGAT | 1 cut(s) | 1184 |
| BsuRI | GGCC | 2 cut(s) | 1328, 1664 |
| BsuTUI | ATCGAT | 1 cut(s) | 1184 |
| BtgI | CCRYGG | 2 cut(s) | 720, 1434 |
| BtsCI | GGATG | 2 cut(s) | 880, 1115 |
| BtsIMutI | CAGTG | 1 cut(s) | 1110 |
| BveI | ACCTGC | 1 cut(s) | 656 |
| Cac8I | GCNNGC | 3 cut(s) | 1269, 1276, 1625 |
| CaiI | CAGNNNCTG | 1 cut(s) | 371 |
| CciI | TCATGA | 2 cut(s) | 835, 855 |
| Cfr13I | GGNCC | 3 cut(s) | 1451, 1493, 1663 |
| ClaI | ATCGAT | 1 cut(s) | 1184 |
| Csp6I | GTAC | 4 cut(s) | 46, 220, 848, 1348 |
| CviAII | CATG | 7 cut(s) | 240, 836, 856, 865, 1215, 1435, 1770 |
| CviQI | GTAC | 4 cut(s) | 46, 220, 848, 1348 |
| DdeI | CTNAG | 3 cut(s) | 85, 890, 1314 |
| DpnI | GATC | 4 cut(s) | 686, 1169, 1183, 1584 |
| DpnII | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1385 |
| Eam1104I | CTCTTC | 4 cut(s) | 130, 450, 736, 879 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1385 |
| EarI | CTCTTC | 4 cut(s) | 130, 450, 736, 879 |
| EciI | GGCGGA | 1 cut(s) | 799 |
| Eco105I | TACGTA | 1 cut(s) | 766 |
| Eco130I | CCWWGG | 6 cut(s) | 250, 454, 1025, 1262, 1434, 1649 |
| Eco24I | GRGCYC | 1 cut(s) | 469 |
| Eco31I | GGTCTC | 2 cut(s) | 536, 1749 |
| Eco47I | GGWCC | 2 cut(s) | 1451, 1493 |
| Eco57I | CTGAAG | 1 cut(s) | 1545 |
| EcoRI | GAATTC | 1 cut(s) | 787 |
| EcoT14I | CCWWGG | 6 cut(s) | 250, 454, 1025, 1262, 1434, 1649 |
| EcoT38I | GRGCYC | 1 cut(s) | 469 |
| ErhI | CCWWGG | 6 cut(s) | 250, 454, 1025, 1262, 1434, 1649 |
| Esp3I | CGTCTC | 1 cut(s) | 1592 |
| FaeI | CATG | 7 cut(s) | 243, 839, 859, 868, 1218, 1438, 1773 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1238, 1270 |
| FaqI | GGGAC | 2 cut(s) | 406, 526 |
| FatI | CATG | 7 cut(s) | 239, 835, 855, 864, 1214, 1434, 1769 |
| FauNDI | CATATG | 1 cut(s) | 1075 |
| Fnu4HI | GCNGC | 4 cut(s) | 717, 897, 952, 1272 |
| FokI | GGATG | 2 cut(s) | 887, 1102 |
| FriOI | GRGCYC | 1 cut(s) | 469 |
| Fsp4HI | GCNGC | 4 cut(s) | 717, 897, 952, 1272 |
| FspBI | CTAG | 6 cut(s) | 137, 861, 1026, 1097, 1158, 1196 |
| GluI | GCNGC | 4 cut(s) | 717, 897, 952, 1272 |
| GsaI | CCCAGC | 1 cut(s) | 438 |
| GsuI | CTGGAG | 2 cut(s) | 466, 1733 |
| HaeIII | GGCC | 2 cut(s) | 1328, 1664 |
| Hin1II | CATG | 7 cut(s) | 243, 839, 859, 868, 1218, 1438, 1773 |
| HincII | GTYRAC | 1 cut(s) | 622 |
| HindII | GTYRAC | 1 cut(s) | 622 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 6 cut(s) | 70, 397, 582, 691, 806, 977 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 2 cut(s) | 622, 763 |
| Hpy188I | TCNGA | 7 cut(s) | 15, 232, 373, 631, 684, 696, 976 |
| Hpy188III | TCNNGA | 9 cut(s) | 67, 637, 688, 836, 856, 943, 1153, 1282, 1316 |
| Hpy8I | GTNNAC | 2 cut(s) | 622, 763 |
| HpyAV | CCTTC | 5 cut(s) | 899, 1159, 1377, 1438, 1569 |
| HpyCH4III | ACNGT | 7 cut(s) | 182, 541, 815, 830, 847, 1387, 1762 |
| HpyCH4IV | ACGT | 4 cut(s) | 273, 765, 921, 1601 |
| HpyCH4V | TGCA | 5 cut(s) | 285, 899, 1079, 1139, 1214 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 153, 291, 722, 1469, 1478, 1487 |
| HpyF3I | CTNAG | 3 cut(s) | 85, 890, 1314 |
| HpySE526I | ACGT | 4 cut(s) | 273, 765, 921, 1601 |
| Hsp92II | CATG | 7 cut(s) | 243, 839, 859, 868, 1218, 1438, 1773 |
| Kzo9I | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| LguI | GCTCTTC | 1 cut(s) | 879 |
| LmnI | GCTCC | 3 cut(s) | 464, 908, 1460 |
| Lsp1109I | GCAGC | 4 cut(s) | 703, 883, 938, 1258 |
| MaeI | CTAG | 6 cut(s) | 137, 861, 1026, 1097, 1158, 1196 |
| MaeII | ACGT | 4 cut(s) | 273, 765, 921, 1601 |
| MaeIII | GTNAC | 5 cut(s) | 197, 439, 1090, 1291, 1301 |
| MalI | GATC | 4 cut(s) | 686, 1169, 1183, 1584 |
| MboI | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| MfeI | CAATTG | 2 cut(s) | 416, 429 |
| MflI | RGATCY | 2 cut(s) | 1167, 1582 |
| MhlI | GDGCHC | 3 cut(s) | 469, 1465, 1636 |
| MlyI | GAGTC | 1 cut(s) | 406 |
| MmeI | TCCRAC | 2 cut(s) | 559, 1575 |
| MseI | TTAA | 3 cut(s) | 225, 1575, 1727 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1134 |
| MspA1I | CMGCKG | 1 cut(s) | 1565 |
| MunI | CAATTG | 2 cut(s) | 416, 429 |
| Mva1269I | GAATGC | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 153, 291, 722, 1469, 1478, 1487 |
| NcoI | CCATGG | 1 cut(s) | 1434 |
| NdeI | CATATG | 1 cut(s) | 1075 |
| NdeII | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| NlaIII | CATG | 7 cut(s) | 243, 839, 859, 868, 1218, 1438, 1773 |
| NlaIV | GGNNCC | 3 cut(s) | 466, 553, 1127 |
| NmuCI | GTSAC | 2 cut(s) | 197, 1090 |
| NspI | RCATGY | 1 cut(s) | 1218 |
| PagI | TCATGA | 2 cut(s) | 835, 855 |
| PaqCI | CACCTGC | 1 cut(s) | 656 |
| PciSI | GCTCTTC | 1 cut(s) | 879 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 927, 1149 |
| PctI | GAATGC | 1 cut(s) | 147 |
| PfeI | GAWTC | 5 cut(s) | 70, 582, 691, 806, 977 |
| PkrI | GCNGC | 4 cut(s) | 718, 898, 953, 1273 |
| PleI | GAGTC | 1 cut(s) | 405 |
| PpsI | GAGTC | 1 cut(s) | 405 |
| Ppu21I | YACGTR | 1 cut(s) | 766 |
| PshBI | ATTAAT | 1 cut(s) | 1575 |
| PspFI | CCCAGC | 1 cut(s) | 434 |
| PspN4I | GGNNCC | 3 cut(s) | 466, 553, 1127 |
| PspPI | GGNCC | 3 cut(s) | 1451, 1493, 1663 |
| PstI | CTGCAG | 1 cut(s) | 901 |
| PstNI | CAGNNNCTG | 1 cut(s) | 371 |
| PsuI | RGATCY | 2 cut(s) | 1167, 1582 |
| PvuII | CAGCTG | 1 cut(s) | 1565 |
| RsaI | GTAC | 4 cut(s) | 47, 221, 849, 1349 |
| RsaNI | GTAC | 4 cut(s) | 46, 220, 848, 1348 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1134 |
| SapI | GCTCTTC | 1 cut(s) | 879 |
| SaqAI | TTAA | 3 cut(s) | 225, 1575, 1727 |
| SatI | GCNGC | 4 cut(s) | 717, 897, 952, 1272 |
| Sau3AI | GATC | 4 cut(s) | 684, 1167, 1181, 1582 |
| Sau96I | GGNCC | 3 cut(s) | 1451, 1493, 1663 |
| SchI | GAGTC | 1 cut(s) | 406 |
| SduI | GDGCHC | 3 cut(s) | 469, 1465, 1636 |
| SfcI | CTRYAG | 2 cut(s) | 897, 912 |
| SinI | GGWCC | 2 cut(s) | 1451, 1493 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1134 |
| SmlI | CTYRAG | 2 cut(s) | 392, 1004 |
| SmoI | CTYRAG | 2 cut(s) | 392, 1004 |
| SnaBI | TACGTA | 1 cut(s) | 766 |
| SpeI | ACTAGT | 1 cut(s) | 1195 |
| SsiI | CCGC | 2 cut(s) | 784, 1686 |
| SspI | AATATT | 1 cut(s) | 1374 |
| SspMI | CTAG | 6 cut(s) | 137, 861, 1026, 1097, 1158, 1196 |
| StyI | CCWWGG | 6 cut(s) | 250, 454, 1025, 1262, 1434, 1649 |
| TaaI | ACNGT | 7 cut(s) | 182, 541, 815, 830, 847, 1387, 1762 |
| TaiI | ACGT | 4 cut(s) | 276, 768, 924, 1604 |
| TaqI | TCGA | 4 cut(s) | 616, 1152, 1184, 1430 |
| TatI | WGTACW | 1 cut(s) | 45 |
| TfiI | GAWTC | 5 cut(s) | 70, 582, 691, 806, 977 |
| Tru1I | TTAA | 3 cut(s) | 225, 1575, 1727 |
| Tru9I | TTAA | 3 cut(s) | 225, 1575, 1727 |
| TscAI | CASTG | 1 cut(s) | 1110 |
| TseFI | GTSAC | 2 cut(s) | 197, 1090 |
| TseI | GCWGC | 4 cut(s) | 716, 896, 951, 1271 |
| Tsp45I | GTSAC | 2 cut(s) | 197, 1090 |
| TspDTI | ATGAA | 5 cut(s) | 32, 483, 891, 897, 988 |
| TspRI | CASTG | 1 cut(s) | 1110 |
| VpaK11BI | GGWCC | 2 cut(s) | 1451, 1493 |
| VspI | ATTAAT | 1 cut(s) | 1575 |
| XapI | RAATTY | 2 cut(s) | 132, 787 |
| XceI | RCATGY | 1 cut(s) | 1218 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1432 |
| XmaJI | CCTAGG | 1 cut(s) | 1025 |
| XspI | CTAG | 6 cut(s) | 137, 861, 1026, 1097, 1158, 1196 |