Rh7BG296200

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000290
Physical Location & Seq
Forward (+)
27963633 .. 27998103
34471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG296200.1

Sequence Viewer

Length: 813 bp
ATGTCTTTGATTGTTCAAGCTAGTTTTGCGGCATATGATAAAAGGGAAAAGACACATAAGAAGATTGTGGAGCAGCAATACGGGGGAAAAAAGAAGAGCAAAAAGTGGCTACAAAGTGAGCACAATCGCACCTTTGCCGATTGGTTTCAATCCAAGGTAGCAATGGGTTCCAAGAAGGGAATTCGCAGATCTCCAAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTCTGTATCAGCCAACACTGTCACGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTTGTTGCCATGTACAAGGTCTTGGTCAAGAAAGTTTTGGGAAAAAAGTTTAAAGTGACATACACCGACACGGGCAATCCAAATGGATCAATAAGGCACACTCTACAGTCTTATATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGACGTGGACGGTGACTTGAAGGATAAACTTTGGCTCGATGTTAAGAAAAAGACTTTGCCTGAAGGAGAGGTAATAGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGTAAAGATGGCTACATAGATGAAGAGGCTAGAGCTGTGGTGACAAAGATAGTTCCAGGGACTGATTCAGATCAATCAAATCCTAAAATCTGCATTATGTCTCAGGTTGTGCACAATGATCTATGCACATCGGATGGTTTGCATGAAGTAGAATTGCTGTTACCATTTGTGGAAGATACTGGAGCAGTTGACTATATTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

270

Amino Acids

30.41

Weight (kDa)

9.44

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccII CGCG 1 cut(s) 466
AciI CCGC 2 cut(s) 29, 466
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 4 cut(s) 17, 149, 263, 520
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 20, 314, 495, 644
AluI AGCT 4 cut(s) 20, 314, 495, 644
Alw21I GWGCWC 3 cut(s) 123, 305, 723
Alw26I GTCTC 3 cut(s) 224, 239, 714
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 2 cut(s) 317, 671
AoxI GGCC 1 cut(s) 497
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 3 cut(s) 73, 314, 317
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 524, 661
BaeGI GKGCMC 2 cut(s) 480, 723
BanI GGYRCC 1 cut(s) 475
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 3 cut(s) 123, 305, 723
BbvI GCAGC 3 cut(s) 85, 301, 304
BccI CCATC 3 cut(s) 488, 611, 737
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 224, 239, 714
BfaI CTAG 3 cut(s) 21, 321, 639
BfmI CTRYAG 1 cut(s) 440
BglII AGATCT 1 cut(s) 188
BisI GCNGC 4 cut(s) 30, 74, 315, 318
BlsI GCNGC 4 cut(s) 31, 75, 316, 319
Bme1390I CCNGG 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 169, 477
BmrFI CCNGG 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 2 cut(s) 153, 665
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 2 cut(s) 153, 665
BseGI GGATG 1 cut(s) 748
BseJI GATNNNNATC 1 cut(s) 678
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 234, 725
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 2 cut(s) 480, 723
BseXI GCAGC 3 cut(s) 85, 301, 304
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 1 cut(s) 499
BshNI GGYRCC 1 cut(s) 475
BsiHKAI GWGCWC 3 cut(s) 123, 305, 723
BslFI GGGAC 1 cut(s) 682
BsmAI GTCTC 3 cut(s) 224, 239, 714
BsmFI GGGAC 1 cut(s) 682
BsnI GGCC 1 cut(s) 499
Bsp1286I GDGCHC 4 cut(s) 123, 305, 480, 723
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 5 cut(s) 188, 422, 577, 679, 727
BspACI CCGC 2 cut(s) 29, 466
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 2 cut(s) 235, 724
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 169, 477
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 153, 665
BssMI GATC 5 cut(s) 188, 422, 577, 679, 727
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 295, 444, 512
Bst6I CTCTTC 2 cut(s) 89, 627
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 3 cut(s) 243, 471, 711
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 5 cut(s) 191, 425, 580, 682, 730
BstMAI GTCTC 3 cut(s) 224, 239, 714
BstMBI GATC 5 cut(s) 188, 422, 577, 679, 727
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 2 cut(s) 480, 723
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 85, 301, 304
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 499
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 291, 303
Cac8I GCNNGC 1 cut(s) 497
CaiI CAGNNNCTG 2 cut(s) 317, 671
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 346, 752
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 243, 471, 711
DpnI GATC 5 cut(s) 190, 424, 579, 681, 729
DpnII GATC 5 cut(s) 188, 422, 577, 679, 727
DraI TTTAAA 1 cut(s) 388
Eam1104I CTCTTC 2 cut(s) 89, 627
EarI CTCTTC 2 cut(s) 89, 627
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 349, 755
FaqI GGGAC 1 cut(s) 682
FatI CATG 2 cut(s) 345, 751
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 30, 74, 315, 318
FokI GGATG 1 cut(s) 755
Fsp4HI GCNGC 4 cut(s) 30, 74, 315, 318
FspBI CTAG 3 cut(s) 21, 321, 639
GlaI GCGC 1 cut(s) 465
GluI GCNGC 4 cut(s) 30, 74, 315, 318
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 1 cut(s) 499
HhaI GCGC 1 cut(s) 466
Hin1II CATG 2 cut(s) 349, 755
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 2 cut(s) 608, 799
HindII GTYRAC 2 cut(s) 608, 799
HinfI GANTC 3 cut(s) 275, 308, 674
HphI GGTGA 2 cut(s) 524, 661
Hpy166II GTNNAC 4 cut(s) 508, 608, 721, 799
Hpy188I TCNGA 2 cut(s) 679, 742
Hpy188III TCNNGA 2 cut(s) 298, 364
Hpy8I GTNNAC 4 cut(s) 508, 608, 721, 799
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 169, 514, 557
HpyCH4III ACNGT 3 cut(s) 295, 444, 512
HpyCH4IV ACGT 2 cut(s) 504, 610
HpyCH4V TGCA 5 cut(s) 584, 702, 721, 735, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 243, 471, 711
HpySE526I ACGT 2 cut(s) 504, 610
Hsp92II CATG 2 cut(s) 349, 755
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 5 cut(s) 188, 422, 577, 679, 727
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 70, 791
LpnPI CCDG 7 cut(s) 255, 481, 573, 651, 678, 698, 774
Lsp1109I GCAGC 3 cut(s) 85, 301, 304
MaeI CTAG 3 cut(s) 21, 321, 639
MaeII ACGT 2 cut(s) 504, 610
MaeIII GTNAC 5 cut(s) 295, 391, 512, 649, 768
MalI GATC 5 cut(s) 190, 424, 579, 681, 729
MboI GATC 5 cut(s) 188, 422, 577, 679, 727
MboII GAAGA 6 cut(s) 73, 106, 275, 607, 644, 794
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 4 cut(s) 123, 305, 480, 723
MluCI AATT 3 cut(s) 180, 585, 761
MnlI CCTC 5 cut(s) 191, 220, 317, 562, 628
MseI TTAA 2 cut(s) 387, 543
MspA1I CMGCKG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 34
NdeII GATC 5 cut(s) 188, 422, 577, 679, 727
NlaIII CATG 2 cut(s) 349, 755
NlaIV GGNNCC 2 cut(s) 169, 477
NmuCI GTSAC 4 cut(s) 295, 391, 512, 649
PciSI GCTCTTC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 275, 308, 674
PkrI GCNGC 4 cut(s) 31, 75, 316, 319
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 169, 477
PspPI GGNCC 1 cut(s) 498
PstNI CAGNNNCTG 2 cut(s) 317, 671
PsuI RGATCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 387, 543
SatI GCNGC 4 cut(s) 30, 74, 315, 318
Sau3AI GATC 5 cut(s) 188, 422, 577, 679, 727
Sau96I GGNCC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 4 cut(s) 123, 305, 480, 723
SfcI CTRYAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 180, 585, 761
SsiI CCGC 2 cut(s) 29, 466
SspMI CTAG 3 cut(s) 21, 321, 639
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 3 cut(s) 295, 444, 512
TaiI ACGT 2 cut(s) 507, 613
TaqI TCGA 1 cut(s) 537
TasI AATT 3 cut(s) 180, 585, 761
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 275, 308, 674
Tru1I TTAA 2 cut(s) 387, 543
Tru9I TTAA 2 cut(s) 387, 543
TscAI CASTG 2 cut(s) 298, 310
TseFI GTSAC 4 cut(s) 295, 391, 512, 649
TseI GCWGC 3 cut(s) 73, 314, 317
Tsp45I GTSAC 4 cut(s) 295, 391, 512, 649
TspDTI ATGAA 3 cut(s) 267, 645, 768
TspRI CASTG 2 cut(s) 298, 310
VneI GTGCAC 1 cut(s) 719
XapI RAATTY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 3 cut(s) 21, 321, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.