Rh5CG382700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000290
Physical Location & Seq
Forward (+)
50089409 .. 50109981
20573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG382700.1

Sequence Viewer

Length: 603 bp
ATGGGTTCCAAGAAGGGAAAATCAAAAGGAGGCAAAAAATCAAAGACCAAAGCGGATAATGATACTAGTCCTGTTGAGACTGATGGCATGGTTGATGCTGGAGAGGATTCTGCTACCGTTGAAACTATGACGAGCACAGAATCAGCCAAAGGAAAAAGCAGAGGAAAGCGAACTGTGGTTGCTTTGTACAAGGTTGTGGTGAAGAAAGCACTTGGGAGGAAATTGAAGGTGACCTACAGTGAAACAGGCAATCCAAATGGCAGAACACGACACACTCTACAGTCGTATATAGGCATATTGGTGCGGAAAATGGTTCCCATCAACGTTGTTAGCTGGCCTGAGGTGGATGGAGACTTGAAAGAAAATCTTTGGATCGATGTTCAGAAACGTACTTTGCCTGAAGGAGAGATAATTGATCGTGCAATTATGTGGAAGAAAGCTCGTGTACCAAAAAATGGAAAGATAGATGAAGAACTGTCATTGGTGGCAACAAAAATAATAAAAGGGAAATTCGTAGATACATGGTGTGATATTAAGGAGTTTGCTCTGATGTGTTATGTAGCTGAAGCCATTGTGACTTTCATATTTAGTCTTGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

200

Amino Acids

22.07

Weight (kDa)

9.57

Isoelectric Point (pI)

20.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 455
AciI CCGC 2 cut(s) 53, 304
AclI AACGTT 1 cut(s) 324
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 2 cut(s) 420, 585
AfaI GTAC 3 cut(s) 188, 391, 447
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 3 cut(s) 122, 226, 358
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 3 cut(s) 333, 440, 563
AluI AGCT 3 cut(s) 333, 440, 563
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 71, 345
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 211, 241
AxyI CCTNAGG 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 3 cut(s) 77, 326, 341
BcoDI GTCTC 2 cut(s) 71, 345
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 2 cut(s) 235, 278
BmiI GGNNCC 2 cut(s) 7, 315
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 337
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 71, 345
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 372, 415
BspACI CCGC 2 cut(s) 53, 304
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 331
BspDI ATCGAT 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 7, 315
BspPI GGATC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 186
BssMI GATC 2 cut(s) 372, 415
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 5 cut(s) 118, 175, 239, 282, 477
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 339
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 375, 418
BstMAI GTCTC 2 cut(s) 71, 345
BstMBI GATC 2 cut(s) 372, 415
BstPI GGTNACC 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 235, 278
Bsu15I ATCGAT 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 3 cut(s) 187, 390, 446
CviAII CATG 2 cut(s) 88, 522
CviJI RGCY 6 cut(s) 146, 333, 337, 440, 563, 569
CviKI_1 RGCY 6 cut(s) 146, 333, 337, 440, 563, 569
CviQI GTAC 3 cut(s) 187, 390, 446
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 374, 417
DpnII GATC 2 cut(s) 372, 415
Eco57I CTGAAG 2 cut(s) 420, 585
Eco81I CCTNAGG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
FaeI CATG 2 cut(s) 91, 525
FaiI YATR 9 cut(s) 89, 128, 288, 290, 296, 428, 523, 558, 584
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 2 cut(s) 87, 521
FokI GGATG 1 cut(s) 359
FspBI CTAG 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 337
Hin1II CATG 2 cut(s) 91, 525
HinfI GANTC 2 cut(s) 107, 140
HphI GGTGA 2 cut(s) 211, 241
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 384, 549
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 7, 220, 395
HpyCH4III ACNGT 5 cut(s) 118, 175, 239, 282, 477
HpyCH4IV ACGT 2 cut(s) 324, 388
HpyCH4V TGCA 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 2 cut(s) 324, 388
Hsp92II CATG 2 cut(s) 91, 525
Kzo9I GATC 2 cut(s) 372, 415
LpnPI CCDG 6 cut(s) 84, 84, 231, 319, 351, 411
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 324, 388
MaeIII GTNAC 2 cut(s) 229, 574
MalI GATC 2 cut(s) 374, 417
MboI GATC 2 cut(s) 372, 415
MboII GAAGA 3 cut(s) 214, 445, 482
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 4 cut(s) 221, 411, 423, 509
MnlI CCTC 5 cut(s) 23, 97, 155, 210, 334
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 299
NdeII GATC 2 cut(s) 372, 415
NlaIII CATG 2 cut(s) 91, 525
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 2 cut(s) 229, 574
PfeI GAWTC 2 cut(s) 107, 140
PflMI CCANNNNNTGG 1 cut(s) 455
Psp1406I AACGTT 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 7, 315
RsaI GTAC 3 cut(s) 188, 391, 447
RsaNI GTAC 3 cut(s) 187, 390, 446
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 2 cut(s) 372, 415
SduI GDGCHC 1 cut(s) 137
SetI ASST 9 cut(s) 195, 231, 236, 327, 335, 345, 391, 442, 565
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 235, 278
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 4 cut(s) 221, 411, 423, 509
SsiI CCGC 2 cut(s) 53, 304
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 118, 175, 239, 282, 477
TaiI ACGT 2 cut(s) 327, 391
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 221, 411, 423, 509
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 107, 140
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 229, 574
Tsp45I GTSAC 2 cut(s) 229, 574
TspDTI ATGAA 2 cut(s) 483, 571
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 455
XapI RAATTY 1 cut(s) 509
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.