Rh1BG091000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000290
Physical Location & Seq
Reverse (-)
14541019 .. 14541561
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG091000.1

Sequence Viewer

Length: 324 bp
ATGGACACAATTCAAGACTTAACAAATAAGCATGTGCTGCCATACTTGGGGAAGAAGAAGAAACTGAGGAAGCCACCGAAGCAATATGCATTTGTTGGGTTACAACCATGGAAGGAATTTGTAACTCAGAGGAAGACAGAGGGATGGCTGAAACTTAACAATGACCAAAGGGAACGAGTCAAGAAGAGAAAATATCATCATAGATTATCAAGAAAGGGATATATTGGACTGGAGGAAGAATTAAGAGATACTTGGCCTGAAGGAGAGGTAATTGATCGCGCTATTATGTGGAAGAAAGCCCGTTTACTAAAAATGGGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

107

Amino Acids

13.0

Weight (kDa)

10.28

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 14
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 138
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 56, 140
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 107
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 57, 139
BspFNI CGCG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 65, 126
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 37, 79
BstNSI RCATGY 1 cut(s) 35
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 149
CfoI GCGC 1 cut(s) 281
CviAII CATG 2 cut(s) 32, 108
CviJI RGCY 4 cut(s) 73, 148, 256, 299
CviKI_1 RGCY 4 cut(s) 73, 148, 256, 299
DdeI CTNAG 2 cut(s) 65, 126
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 35, 111
FaiI YATR 7 cut(s) 33, 43, 87, 109, 201, 222, 287
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 2 cut(s) 31, 107
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 38
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 256
HhaI GCGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 35, 111
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 14, 181, 210
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 106, 254
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 79
HpyF3I CTNAG 2 cut(s) 65, 126
Hsp92II CATG 2 cut(s) 35, 111
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 215, 270
Lsp1109I GCAGC 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 99, 121
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 7 cut(s) 64, 67, 70, 145, 196, 248, 304
MluCI AATT 4 cut(s) 9, 116, 239, 270
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 5 cut(s) 60, 123, 133, 226, 259
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 3 cut(s) 20, 156, 242
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 37, 79
NcoI CCATGG 1 cut(s) 107
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 35, 111
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 35
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 20, 156, 242
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 186
SetI ASST 1 cut(s) 270
Sse9I AATT 4 cut(s) 9, 116, 239, 270
StyI CCWWGG 1 cut(s) 107
TasI AATT 4 cut(s) 9, 116, 239, 270
Tru1I TTAA 3 cut(s) 20, 156, 242
Tru9I TTAA 3 cut(s) 20, 156, 242
TseI GCWGC 1 cut(s) 37
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.