Rmu_sc0000340.1_g000034

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000340.1
OG0000290
Physical Location & Seq
Reverse (-)
156277 .. 157779
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000340.1_g000034.1.cds

Sequence Viewer

Length: 885 bp
atggctcaagaatcagataaagcttcgttggaagaagtagcgcacaatgtggatggaactaaaattcggagcatttttgaagcaatggaaaacaaaaccctcatgcataagaggaaactaacaaaggtggttaaggaaggtaggttggataaacgtccttgctccaagggaggtaatgagtttcccaagttggttgagaaaatagttgtcaaccgtgaggatgtcactgaggctgttgatgaaaatgtcaatctgaccaaggagccggagaatgaggagggggtagaatacgtggatttgacgatgtgtccacccacatcaaagtcaaaggtagctgaggttgaatgcaagttggcaataggttctgttgaacatattgttgcttgtgccactgttatggagtgcgaggatccttcccaacttgttcatggcactccactaggggatggcaatgtgcccgtttctatctatgccgcgcttgaggagaaagcaaaagtaccatttcctgtgaaacatgaaattgaaacagtgaagcaggctatggggagttgggtagcatggcctaaacacctagtcataaaatcacatctcaagaaacctcccaaggatagtgctgaaaagaagaagaaaaggaaagagacaggggaagagtactcggagattgaatttggcttgggtaaattggcaccatcattaccagcttcattgaagatgttatgtttgtggggtgaagatgcattcaaagatgggcatacaatcagcttctacatggagcctgaagtgtttggattttctcgcaagacttatatattgggaaaagatgttcggcgactggcaagcatgagggaattaactggaacatgcattgtagtgtaccagaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

294

Amino Acids

32.87

Weight (kDa)

6.49

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 685
AccII CGCG 1 cut(s) 476
AciI CCGC 1 cut(s) 474
AclWI GGATC 2 cut(s) 404, 417
AcsI RAATTY 2 cut(s) 63, 665
AcuI CTGAAG 1 cut(s) 798
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 3 cut(s) 498, 653, 875
AgsI TTSAA 7 cut(s) 80, 344, 371, 524, 665, 709, 742
AhdI GACNNNNNGTC 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 807, 839
AluBI AGCT 4 cut(s) 23, 335, 701, 762
AluI AGCT 4 cut(s) 23, 335, 701, 762
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 404, 417
AoxI GGCC 1 cut(s) 560
ApoI RAATTY 2 cut(s) 63, 665
AspLEI GCGC 2 cut(s) 43, 478
AsuHPI GGTGA 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 459
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 685
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 4 cut(s) 47, 440, 697, 740
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 2 cut(s) 440, 572
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
BmcAI AGTACT 1 cut(s) 653
BmeRI GACNNNNNGTC 1 cut(s) 306
BmiI GGNNCC 4 cut(s) 264, 411, 687, 774
BmsI GCATC 1 cut(s) 724
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 500, 575
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 165, 258, 603
Bse1I ACTGG 2 cut(s) 837, 859
Bse3DI GCAATG 2 cut(s) 90, 457
BseDI CCNNGG 3 cut(s) 165, 258, 603
BseGI GGATG 3 cut(s) 58, 226, 451
BseMI GCAATG 2 cut(s) 90, 457
BseMII CTCAG 2 cut(s) 219, 327
BseNI ACTGG 2 cut(s) 837, 859
BseRI GAGGAG 2 cut(s) 290, 497
BseSI GKGCMC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 685
BsiSI CCGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 632
BsmI GAATGC 2 cut(s) 350, 737
BsnI GGCC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 2 cut(s) 220, 328
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 4 cut(s) 264, 411, 687, 774
BspPI GGATC 2 cut(s) 404, 417
BspT107I GGYRCC 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 90, 457
BsrI ACTGG 2 cut(s) 837, 859
BssECI CCNNGG 3 cut(s) 165, 258, 603
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 3 cut(s) 165, 258, 603
Bst4CI ACNGT 3 cut(s) 215, 394, 529
Bst6I CTCTTC 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 537, 838
BstDEI CTNAG 2 cut(s) 228, 336
BstF5I GGATG 3 cut(s) 58, 226, 451
BstFNI CGCG 1 cut(s) 476
BstHHI GCGC 2 cut(s) 43, 478
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 3 cut(s) 58, 226, 451
BtsIMutI CAGTG 3 cut(s) 225, 390, 534
Cac8I GCNNGC 2 cut(s) 537, 838
CfoI GCGC 2 cut(s) 43, 478
Csp6I GTAC 3 cut(s) 497, 652, 874
CviAII CATG 7 cut(s) 103, 428, 515, 558, 769, 841, 861
CviQI GTAC 3 cut(s) 497, 652, 874
DdeI CTNAG 2 cut(s) 228, 336
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraIII CACNNNGTG 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 642
Eam1105I GACNNNNNGTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 3 cut(s) 165, 258, 603
Eco57I CTGAAG 1 cut(s) 798
EcoT14I CCWWGG 3 cut(s) 165, 258, 603
EcoT22I ATGCAT 3 cut(s) 108, 739, 866
ErhI CCWWGG 3 cut(s) 165, 258, 603
FaeI CATG 7 cut(s) 106, 431, 518, 561, 772, 844, 864
FatI CATG 7 cut(s) 102, 427, 514, 557, 768, 840, 860
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 3 cut(s) 65, 233, 458
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 2 cut(s) 440, 572
GlaI GCGC 2 cut(s) 42, 477
GluI GCNGC 1 cut(s) 474
HaeIII GGCC 1 cut(s) 562
HapII CCGG 1 cut(s) 266
HhaI GCGC 2 cut(s) 43, 478
Hin1II CATG 7 cut(s) 106, 431, 518, 561, 772, 844, 864
Hin6I GCGC 2 cut(s) 41, 476
HinP1I GCGC 2 cut(s) 41, 476
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 3 cut(s) 211, 311, 874
Hpy188I TCNGA 4 cut(s) 16, 69, 255, 658
Hpy188III TCNNGA 2 cut(s) 8, 592
Hpy8I GTNNAC 3 cut(s) 211, 311, 874
HpyAV CCTTC 2 cut(s) 131, 423
HpyCH4III ACNGT 3 cut(s) 215, 394, 529
HpyCH4IV ACGT 2 cut(s) 154, 291
HpyCH4V TGCA 4 cut(s) 106, 348, 737, 864
HpyF3I CTNAG 2 cut(s) 228, 336
HpySE526I ACGT 2 cut(s) 154, 291
Hsp92II CATG 7 cut(s) 106, 431, 518, 561, 772, 844, 864
HspAI GCGC 2 cut(s) 41, 476
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 4 cut(s) 69, 167, 262, 772
LpnPI CCDG 8 cut(s) 279, 519, 521, 627, 711, 789, 818, 840
LweI GCATC 1 cut(s) 724
MaeI CTAG 2 cut(s) 440, 572
MaeII ACGT 2 cut(s) 154, 291
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 6 cut(s) 44, 634, 637, 659, 721, 743
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 5 cut(s) 63, 519, 665, 680, 848
MmeI TCCRAC 2 cut(s) 9, 126
Mph1103I ATGCAT 3 cut(s) 108, 739, 866
MseI TTAA 2 cut(s) 132, 851
MslI CAYNNNNRTG 2 cut(s) 395, 869
MspI CCGG 1 cut(s) 266
Mva1269I GAATGC 2 cut(s) 350, 737
MvnI CGCG 1 cut(s) 476
NdeII GATC 1 cut(s) 409
NlaIII CATG 7 cut(s) 106, 431, 518, 561, 772, 844, 864
NlaIV GGNNCC 4 cut(s) 264, 411, 687, 774
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 3 cut(s) 108, 739, 866
NspI RCATGY 1 cut(s) 864
PctI GAATGC 2 cut(s) 350, 737
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 292
PspN4I GGNNCC 4 cut(s) 264, 411, 687, 774
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 3 cut(s) 498, 653, 875
RsaNI GTAC 3 cut(s) 497, 652, 874
RseI CAYNNNNRTG 2 cut(s) 395, 869
SaqAI TTAA 2 cut(s) 132, 851
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 1 cut(s) 409
ScaI AGTACT 1 cut(s) 653
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 1 cut(s) 724
SmiMI CAYNNNNRTG 2 cut(s) 395, 869
SmlI CTYRAG 3 cut(s) 6, 479, 590
SmoI CTYRAG 3 cut(s) 6, 479, 590
Sse9I AATT 5 cut(s) 63, 519, 665, 680, 848
SsiI CCGC 1 cut(s) 474
SspMI CTAG 2 cut(s) 440, 572
StyI CCWWGG 3 cut(s) 165, 258, 603
TaaI ACNGT 3 cut(s) 215, 394, 529
TaiI ACGT 2 cut(s) 157, 294
TasI AATT 5 cut(s) 63, 519, 665, 680, 848
TatI WGTACW 1 cut(s) 651
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 132, 851
Tru9I TTAA 2 cut(s) 132, 851
TscAI CASTG 3 cut(s) 232, 397, 534
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 255, 416, 531, 693
TspRI CASTG 3 cut(s) 232, 397, 534
XapI RAATTY 2 cut(s) 63, 665
XceI RCATGY 1 cut(s) 864
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 2 cut(s) 440, 572
ZrmI AGTACT 1 cut(s) 653
Zsp2I ATGCAT 3 cut(s) 108, 739, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.