RchiOBHm_Chr4g0417051

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000290
Physical Location & Seq
Reverse (-)
42248628 .. 42251636
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38714

Sequence Viewer

Length: 2076 bp
ATGGGTTCCAAGAAGGGAATTCGCAAATCTCCAAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTCTGTATCAGCCAACACTGTCACGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTGGTTGCCATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTGACATACACTGACACGAGCAATCTAAATGGATCAATAAGGCACACTCTACAGTCTTATATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGACGTGGACGGTGACTTGAAGGATAAACTTTGGCTCGATGTTAAGGATACATTCAAGGTCGCCCCTGAAAGTAAGAAACTGGTATTGACATCTGCTGGCACTAAATGGAGAGCATTCAAGACCATGTTAACAAGAAAATATGTGCTCCCATACTTGGGAAAGAAGAAGAAGTTGAGAAAGCCACCAAGTCAATATGCATTTGTTGGGAGGCAGCCATGGAGGCAATTTGTGAAAGAGAGGACTACCGAGAAATGGCTGGAACTACATAATAAACAAAGTGAAAGAGTTCAGAAGAGAAAATATCATCATCGATTATCAAGAAAAGGATATATTGGACTAGAAGAGGAGCTGAAAAAGACTTTGCCTGAAGGAGAGGTAATAGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGTAAAGATGGGGACATAGATGAAGAGGCTAGAGCTGTGGTGACAAAGATAGATGATTTGTTGGAGAAGAAAAGTAAAGGTGAGCTTGAGATTTCAGGGAGTAGCGATGTTCTTTCTCAAGCATTAGAAACTCCTGAACACTCGGGTAGGGTGAGGGGTGTTGGAGGCTTCATCAATCCCTCTACATACTTTAAACTTCCGAAGCTGAAAAGGATTAGAATTACCAAGGCAGACTTACTAGCACGTGATAGAGAGCGTGATAGAGAGTTGGAGGAGACAAAGAAAATGCTCACTGCACAGCAAGCAAAGGCAAAAGAGCTCTTACATAAAAGGATTGCTGCATTAGAAGCAATGATAACAGGGAAGACACCCAACACTCCACCTTTGAATGTCCATGTTGTGGGAAACTGTAGAATTTCCCCTGTATCGGATAAAGGAAGTATCCATGATAGAACACTAACTACCTCAAATAATCTTGATGAAGCCAAGGTGAAAGAAGAGGTTCAGGACTGCGAGGTTGTTCCTCCCCCTAATGAAATGGGTGGCACATGTGAGTTAGCAGTGGATACCATCAGCAACATAGTTGCTTTTGGTACCGTATTTGAGGATGAGGATGTTAATAGGATGATACATGGAGTTTTGTTGAAGGAGGGGTGTGTTAGGGTGTCAGTGGATGGGGCCATTCAAGCTGAAGCACGACTTCCTTTCCCAGTGGAGGGTGAGATGGGATTGGTTGGCCAAGCTGTTGGAAGTCATGTGGCTTGGCCTGAGGAGCTTGTTATTCGAAGAGTGAATAAGAAAAAGAAAAGGAAGATGGATTTTGTCAAACAATTGTTTGATCAAGCTAAGCTAAACTCATTTGTACCAAAGCGCTGCAAATTATTGTATAAACATGCCAAAACTATTATGAGCCAAACTAGTGAGTCGATAAGCACGGTGTTGGACGATAAAGTCTTCGGGTTACACAAAGAGCTCTTCATATTGACTGAGAATGTCACTGATCTTTTAGAAATGAAGAAGATTGGCCAAGGAGTGATAGCAGCATACATGGCGCACCTACATGAAACTCTTACTGAGAGAGATGAGTTGGACACCTTTGCATTCATTGATCCTGCAGCCACATATAACTGTGAGAGATCAGGATTTGGTCCTTACTTAGTGGATCGGTTGAAAGAGGGAAAGGCTGATCGTATATTCTTTATGCCCTACAATCCGGGGGAACATTGGATTTTGACAATCATTTGGGAGGATGAAGTCTACATCTTAGACCCTTTGCCAAAACCGGTCCATTACACGGCATGGGAAACTGCAGTGATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

691

Amino Acids

78.42

Weight (kDa)

9.38

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 434 - 512 6.4e-13 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1703
Acc65I GGTACC 1 cut(s) 1346
AccB1I GGYRCC 2 cut(s) 313, 1346
AccB7I CCANNNNNTGG 1 cut(s) 1153
AccI GTMKAC 1 cut(s) 2010
AccII CGCG 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AclWI GGATC 3 cut(s) 268, 1856, 1923
AcoI YGGCCR 2 cut(s) 1489, 1777
AcsI RAATTY 2 cut(s) 18, 1167
AcuI CTGAAG 2 cut(s) 726, 1464
AcvI CACGTG 1 cut(s) 998
AfaI GTAC 3 cut(s) 188, 1348, 1617
AfeI AGCGCT 1 cut(s) 1625
AfiI CCNNNNNNNGG 8 cut(s) 493, 494, 591, 1153, 1180, 1468, 1469, 2047
AflIII ACRYGT 1 cut(s) 1301
AgeI ACCGGT 1 cut(s) 2035
AgsI TTSAA 8 cut(s) 101, 358, 394, 457, 1141, 1399, 1439, 1924
AhlI ACTAGT 1 cut(s) 1670
AjiI CACGTC 1 cut(s) 343
Alw21I GWGCWC 4 cut(s) 143, 486, 1074, 1728
Alw26I GTCTC 3 cut(s) 62, 77, 1022
AlwI GGATC 3 cut(s) 268, 1856, 1923
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 895
Aor51HI AGCGCT 1 cut(s) 1625
AoxI GGCC 5 cut(s) 335, 1431, 1489, 1517, 1777
ApeKI GCWGC 7 cut(s) 152, 155, 550, 1091, 1626, 1793, 1868
ApoI RAATTY 2 cut(s) 18, 1167
AsiGI ACCGGT 1 cut(s) 2035
Asp700I GAANNNNTTC 2 cut(s) 624, 1254
Asp718I GGTACC 1 cut(s) 1346
AspLEI GCGC 3 cut(s) 304, 1626, 1807
AspS9I GGNCC 4 cut(s) 336, 1431, 1901, 2038
AsuC2I CCSGG 1 cut(s) 1968
AsuHPI GGTGA 6 cut(s) 362, 805, 845, 916, 1255, 1484
AsuII TTCGAA 1 cut(s) 1537
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 2 cut(s) 1901, 2038
AxyI CCTNAGG 1 cut(s) 1521
BaeGI GKGCMC 1 cut(s) 318
BalI TGGCCA 2 cut(s) 1491, 1779
BanI GGYRCC 2 cut(s) 313, 1346
BanII GRGCYC 2 cut(s) 1074, 1728
BauI CACGAG 2 cut(s) 136, 244
BbrPI CACGTG 1 cut(s) 998
BbsI GAAGAC 2 cut(s) 1124, 1699
Bbv12I GWGCWC 4 cut(s) 143, 486, 1074, 1728
BbvI GCAGC 7 cut(s) 139, 142, 562, 1078, 1613, 1805, 1880
BccI CCATC 6 cut(s) 326, 755, 1331, 1421, 1471, 1561
BceAI ACGGC 1 cut(s) 2064
BciVI GTATCC 3 cut(s) 379, 1205, 1312
BclI TGATCA 1 cut(s) 1591
BcnI CCSGG 1 cut(s) 1968
BcoDI GTCTC 3 cut(s) 62, 77, 1022
BcuI ACTAGT 1 cut(s) 1670
BfaI CTAG 5 cut(s) 159, 677, 783, 992, 1671
BfmI CTRYAG 4 cut(s) 278, 1162, 1866, 2061
BfoI RGCGCY 1 cut(s) 1627
BfuI GTATCC 3 cut(s) 379, 1205, 1312
BglI GCCNNNNNGGC 1 cut(s) 559
BisI GCNGC 7 cut(s) 153, 156, 551, 1092, 1627, 1794, 1869
BlpI GCTNAGC 1 cut(s) 1599
BlsI GCNGC 7 cut(s) 154, 157, 552, 1093, 1628, 1795, 1870
Bme1390I CCNGG 1 cut(s) 1968
Bme18I GGWCC 2 cut(s) 1901, 2038
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 4 cut(s) 336, 1431, 1901, 2038
BmiI GGNNCC 4 cut(s) 7, 315, 1348, 1432
BmrFI CCNGG 1 cut(s) 1968
BmrI ACTGGG 1 cut(s) 1457
BmuI ACTGGG 1 cut(s) 1457
BpiI GAAGAC 2 cut(s) 1124, 1699
Bpu1102I GCTNAGC 1 cut(s) 1599
Bpu14I TTCGAA 1 cut(s) 1537
BpuEI CTTGAG 2 cut(s) 855, 860
BpuMI CCSGG 1 cut(s) 1968
Bsa29I ATCGAT 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 998
BsaJI CCNNGG 5 cut(s) 554, 978, 1239, 1780, 1967
BsaWI WCCGGW 1 cut(s) 2035
Bsc4I CCNNNNNNNGG 8 cut(s) 493, 494, 591, 1153, 1180, 1468, 1469, 2047
Bse118I RCCGGY 1 cut(s) 2035
Bse1I ACTGG 2 cut(s) 423, 1463
Bse21I CCTNAGG 1 cut(s) 1521
Bse3DI GCAATG 1 cut(s) 1110
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 5 cut(s) 554, 978, 1239, 1780, 1967
BseGI GGATG 5 cut(s) 1366, 1372, 1383, 1432, 2008
BseLI CCNNNNNNNGG 8 cut(s) 493, 494, 591, 1153, 1180, 1468, 1469, 2047
BseMI GCAATG 1 cut(s) 1110
BseMII CTCAG 4 cut(s) 72, 1512, 1731, 1818
BseNI ACTGG 2 cut(s) 423, 1463
BseRI GAGGAG 4 cut(s) 80, 698, 1040, 1538
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 7 cut(s) 139, 142, 562, 1078, 1613, 1805, 1880
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 5 cut(s) 337, 1433, 1491, 1519, 1779
BshNI GGYRCC 2 cut(s) 313, 1346
BshTI ACCGGT 1 cut(s) 2035
BshVI ATCGAT 1 cut(s) 649
BsiHKAI GWGCWC 4 cut(s) 143, 486, 1074, 1728
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 2 cut(s) 1967, 2036
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 8 cut(s) 493, 494, 591, 1153, 1180, 1468, 1469, 2047
BsmAI GTCTC 3 cut(s) 62, 77, 1022
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 452, 1853
BsnI GGCC 5 cut(s) 337, 1433, 1491, 1519, 1779
BsoBI CYCGRG 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 1537
Bsp1286I GDGCHC 5 cut(s) 143, 318, 486, 1074, 1728
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
Bsp1720I GCTNAGC 1 cut(s) 1599
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 1 cut(s) 304
BspANI GGCC 5 cut(s) 337, 1433, 1491, 1519, 1779
BspCNI CTCAG 4 cut(s) 73, 1513, 1732, 1819
BspDI ATCGAT 1 cut(s) 649
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 4 cut(s) 7, 315, 1348, 1432
BspMAI CTGCAG 2 cut(s) 1870, 2065
BspPI GGATC 3 cut(s) 268, 1856, 1923
BspQI GCTCTTC 1 cut(s) 1733
BspT104I TTCGAA 1 cut(s) 1537
BspT107I GGYRCC 2 cut(s) 313, 1346
BsrDI GCAATG 1 cut(s) 1110
BsrFI RCCGGY 1 cut(s) 2035
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 2 cut(s) 423, 1463
BssAI RCCGGY 1 cut(s) 2035
BssECI CCNNGG 5 cut(s) 554, 978, 1239, 1780, 1967
BssMI GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
BssSI CACGAG 2 cut(s) 136, 244
BssT1I CCWWGG 4 cut(s) 554, 978, 1239, 1780
Bst2BI CACGAG 2 cut(s) 136, 244
Bst4CI ACNGT 7 cut(s) 133, 282, 350, 1163, 1351, 1690, 1883
Bst6I CTCTTC 6 cut(s) 626, 675, 771, 1245, 1534, 1733
BstAUI TGTACA 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 998
BstBI TTCGAA 1 cut(s) 1537
BstC8I GCNNGC 3 cut(s) 335, 436, 1056
BstDEI CTNAG 8 cut(s) 81, 309, 1521, 1599, 1740, 1827, 1909, 2017
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 5 cut(s) 1366, 1372, 1383, 1432, 2008
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 1627
BstHHI GCGC 3 cut(s) 304, 1626, 1807
BstKTI GATC 8 cut(s) 263, 724, 1594, 1756, 1864, 1892, 1918, 1942
BstMAI GTCTC 3 cut(s) 62, 77, 1022
BstMBI GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
BstMWI GCNNNNNNNGC 6 cut(s) 559, 1055, 1100, 1439, 1525, 1802
BstNSI RCATGY 2 cut(s) 1305, 1649
BstSCI CCNGG 1 cut(s) 1966
BstSFI CTRYAG 4 cut(s) 278, 1162, 1866, 2061
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 7 cut(s) 139, 142, 562, 1078, 1613, 1805, 1880
BstV2I GAAGAC 2 cut(s) 1124, 1699
BstXI CCANNNNNNTGG 1 cut(s) 1499
Bsu15I ATCGAT 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 1521
BsuI GTATCC 3 cut(s) 379, 1205, 1312
BsuRI GGCC 5 cut(s) 337, 1433, 1491, 1519, 1779
BsuTUI ATCGAT 1 cut(s) 649
BtgI CCRYGG 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 873
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 5 cut(s) 1366, 1372, 1383, 1432, 2008
BtsI GCAGTG 3 cut(s) 1044, 1320, 2070
BtsIMutI CAGTG 9 cut(s) 129, 141, 237, 1044, 1320, 1428, 1470, 1749, 2070
Cac8I GCNNGC 3 cut(s) 335, 436, 1056
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 3 cut(s) 304, 1626, 1807
Cfr10I RCCGGY 1 cut(s) 2035
Cfr13I GGNCC 4 cut(s) 336, 1431, 1901, 2038
ClaI ATCGAT 1 cut(s) 649
Csp6I GTAC 3 cut(s) 187, 1347, 1616
CspAI ACCGGT 1 cut(s) 2035
CviQI GTAC 3 cut(s) 187, 1347, 1616
DdeI CTNAG 8 cut(s) 81, 309, 1521, 1599, 1740, 1827, 1909, 2017
DpnI GATC 8 cut(s) 262, 723, 1593, 1755, 1863, 1891, 1917, 1941
DpnII GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
DraI TTTAAA 2 cut(s) 226, 946
DrdI GACNNNNNNGTC 1 cut(s) 1703
DseDI GACNNNNNNGTC 1 cut(s) 1703
EaeI YGGCCR 2 cut(s) 1489, 1777
Eam1104I CTCTTC 6 cut(s) 626, 675, 771, 1245, 1534, 1733
EarI CTCTTC 6 cut(s) 626, 675, 771, 1245, 1534, 1733
Ecl136II GAGCTC 2 cut(s) 1072, 1726
Eco130I CCWWGG 4 cut(s) 554, 978, 1239, 1780
Eco24I GRGCYC 2 cut(s) 1074, 1728
Eco47I GGWCC 2 cut(s) 1901, 2038
Eco47III AGCGCT 1 cut(s) 1625
Eco53kI GAGCTC 2 cut(s) 1072, 1726
Eco57I CTGAAG 2 cut(s) 726, 1464
Eco72I CACGTG 1 cut(s) 998
Eco81I CCTNAGG 1 cut(s) 1521
Eco88I CYCGRG 1 cut(s) 895
EcoICRI GAGCTC 2 cut(s) 1072, 1726
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 4 cut(s) 554, 978, 1239, 1780
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 1074, 1728
ErhI CCWWGG 4 cut(s) 554, 978, 1239, 1780
FalI AAGNNNNNCTT 6 cut(s) 822, 854, 971, 1003, 1437, 1469
FaqI GGGAC 1 cut(s) 779
FbaI TGATCA 1 cut(s) 1591
FblI GTMKAC 1 cut(s) 2010
Fnu4HI GCNGC 7 cut(s) 153, 156, 551, 1092, 1627, 1794, 1869
FokI GGATG 5 cut(s) 1373, 1379, 1390, 1439, 2015
FriOI GRGCYC 2 cut(s) 1074, 1728
Fsp4HI GCNGC 7 cut(s) 153, 156, 551, 1092, 1627, 1794, 1869
FspBI CTAG 5 cut(s) 159, 677, 783, 992, 1671
GlaI GCGC 3 cut(s) 303, 1625, 1806
GluI GCNGC 7 cut(s) 153, 156, 551, 1092, 1627, 1794, 1869
HaeII RGCGCY 1 cut(s) 1627
HaeIII GGCC 5 cut(s) 337, 1433, 1491, 1519, 1779
HapII CCGG 2 cut(s) 1967, 2036
HhaI GCGC 3 cut(s) 304, 1626, 1807
Hin6I GCGC 3 cut(s) 302, 1624, 1805
HinP1I GCGC 3 cut(s) 302, 1624, 1805
HincII GTYRAC 2 cut(s) 468, 752
HindII GTYRAC 2 cut(s) 468, 752
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 3 cut(s) 113, 146, 1676
HpaI GTTAAC 1 cut(s) 468
HpaII CCGG 2 cut(s) 1967, 2036
HphI GGTGA 6 cut(s) 362, 805, 845, 916, 1255, 1484
Hpy166II GTNNAC 4 cut(s) 346, 468, 752, 2011
Hpy188I TCNGA 3 cut(s) 630, 954, 1183
Hpy188III TCNNGA 8 cut(s) 136, 202, 457, 657, 887, 1229, 1259, 1893
Hpy8I GTNNAC 4 cut(s) 346, 468, 752, 2011
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 7, 352, 701, 1393
HpyCH4III ACNGT 7 cut(s) 133, 282, 350, 1163, 1351, 1690, 1883
HpyCH4IV ACGT 3 cut(s) 342, 754, 997
HpyCH4V TGCA 8 cut(s) 536, 728, 1049, 1094, 1629, 1853, 1868, 2063
HpyF10VI GCNNNNNNNGC 6 cut(s) 559, 1055, 1100, 1439, 1525, 1802
HpyF3I CTNAG 8 cut(s) 81, 309, 1521, 1599, 1740, 1827, 1909, 2017
HpySE526I ACGT 3 cut(s) 342, 754, 997
HspAI GCGC 3 cut(s) 302, 1624, 1805
KpnI GGTACC 1 cut(s) 1350
Ksp22I TGATCA 1 cut(s) 1591
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
LguI GCTCTTC 1 cut(s) 1733
LmnI GCTCC 3 cut(s) 489, 685, 1525
Lsp1109I GCAGC 7 cut(s) 139, 142, 562, 1078, 1613, 1805, 1880
MaeI CTAG 5 cut(s) 159, 677, 783, 992, 1671
MaeII ACGT 3 cut(s) 342, 754, 997
MaeIII GTNAC 6 cut(s) 133, 229, 350, 793, 1713, 1747
MalI GATC 8 cut(s) 262, 723, 1593, 1755, 1863, 1891, 1917, 1941
MboI GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
MfeI CAATTG 1 cut(s) 1583
MhlI GDGCHC 5 cut(s) 143, 318, 486, 1074, 1728
MlsI TGGCCA 2 cut(s) 1491, 1779
MluCI AATT 7 cut(s) 18, 563, 729, 972, 1167, 1583, 1631
MluNI TGGCCA 2 cut(s) 1491, 1779
MlyI GAGTC 1 cut(s) 1685
MmeI TCCRAC 6 cut(s) 795, 895, 1002, 1480, 1674, 1821
Mox20I TGGCCA 2 cut(s) 1491, 1779
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 2 cut(s) 624, 1254
MscI TGGCCA 2 cut(s) 1491, 1779
MseI TTAA 5 cut(s) 225, 381, 467, 945, 1371
MslI CAYNNNNRTG 1 cut(s) 1812
Msp20I TGGCCA 2 cut(s) 1491, 1779
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 1967, 2036
MspR9I CCNGG 1 cut(s) 1968
MunI CAATTG 1 cut(s) 1583
Mva1269I GAATGC 2 cut(s) 452, 1853
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 6 cut(s) 559, 1055, 1100, 1439, 1525, 1802
NciI CCSGG 1 cut(s) 1968
NcoI CCATGG 1 cut(s) 554
NdeII GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
NlaIV GGNNCC 4 cut(s) 7, 315, 1348, 1432
NmuCI GTSAC 5 cut(s) 133, 229, 350, 793, 1747
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 2 cut(s) 1305, 1649
NspV TTCGAA 1 cut(s) 1537
PciI ACATGT 1 cut(s) 1301
PciSI GCTCTTC 1 cut(s) 1733
PctI GAATGC 2 cut(s) 452, 1853
PdmI GAANNNNTTC 2 cut(s) 624, 1254
PfeI GAWTC 2 cut(s) 113, 146
PflMI CCANNNNNTGG 1 cut(s) 1153
PinAI ACCGGT 1 cut(s) 2035
PkrI GCNGC 7 cut(s) 154, 157, 552, 1093, 1628, 1795, 1870
PleI GAGTC 1 cut(s) 1684
PmaCI CACGTG 1 cut(s) 998
PmlI CACGTG 1 cut(s) 998
PpsI GAGTC 1 cut(s) 1684
Ppu21I YACGTR 1 cut(s) 998
PscI ACATGT 1 cut(s) 1301
Psp124BI GAGCTC 2 cut(s) 1074, 1728
PspCI CACGTG 1 cut(s) 998
PspN4I GGNNCC 4 cut(s) 7, 315, 1348, 1432
PspPI GGNCC 4 cut(s) 336, 1431, 1901, 2038
PsrI GAACNNNNNNTAC 2 cut(s) 1198, 1230
PstI CTGCAG 2 cut(s) 1870, 2065
PstNI CAGNNNCTG 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 3 cut(s) 188, 1348, 1617
RsaNI GTAC 3 cut(s) 187, 1347, 1616
RseI CAYNNNNRTG 1 cut(s) 1812
SacI GAGCTC 2 cut(s) 1074, 1728
SapI GCTCTTC 1 cut(s) 1733
SaqAI TTAA 5 cut(s) 225, 381, 467, 945, 1371
SatI GCNGC 7 cut(s) 153, 156, 551, 1092, 1627, 1794, 1869
Sau3AI GATC 8 cut(s) 260, 721, 1591, 1753, 1861, 1889, 1915, 1939
Sau96I GGNCC 4 cut(s) 336, 1431, 1901, 2038
SchI GAGTC 1 cut(s) 1685
ScrFI CCNGG 1 cut(s) 1968
SduI GDGCHC 5 cut(s) 143, 318, 486, 1074, 1728
SfcI CTRYAG 4 cut(s) 278, 1162, 1866, 2061
SfuI TTCGAA 1 cut(s) 1537
SinI GGWCC 2 cut(s) 1901, 2038
SmiMI CAYNNNNRTG 1 cut(s) 1812
SmlI CTYRAG 2 cut(s) 839, 870
SmoI CTYRAG 2 cut(s) 839, 870
SpeI ACTAGT 1 cut(s) 1670
Sse9I AATT 7 cut(s) 18, 563, 729, 972, 1167, 1583, 1631
SsiI CCGC 1 cut(s) 304
SspMI CTAG 5 cut(s) 159, 677, 783, 992, 1671
SstI GAGCTC 2 cut(s) 1074, 1728
StyD4I CCNGG 1 cut(s) 1966
StyI CCWWGG 4 cut(s) 554, 978, 1239, 1780
TaaI ACNGT 7 cut(s) 133, 282, 350, 1163, 1351, 1690, 1883
TaiI ACGT 3 cut(s) 345, 757, 1000
TaqI TCGA 4 cut(s) 375, 649, 1537, 1679
TasI AATT 7 cut(s) 18, 563, 729, 972, 1167, 1583, 1631
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 113, 146
Tru1I TTAA 5 cut(s) 225, 381, 467, 945, 1371
Tru9I TTAA 5 cut(s) 225, 381, 467, 945, 1371
TscAI CASTG 9 cut(s) 136, 148, 244, 1051, 1320, 1428, 1470, 1756, 2070
TseFI GTSAC 5 cut(s) 133, 229, 350, 793, 1747
TseI GCWGC 7 cut(s) 152, 155, 550, 1091, 1626, 1793, 1868
Tsp45I GTSAC 5 cut(s) 133, 229, 350, 793, 1747
TspRI CASTG 9 cut(s) 136, 148, 244, 1051, 1320, 1428, 1470, 1756, 2070
Van91I CCANNNNNTGG 1 cut(s) 1153
VpaK11BI GGWCC 2 cut(s) 1901, 2038
XapI RAATTY 2 cut(s) 18, 1167
XceI RCATGY 2 cut(s) 1305, 1649
XmiI GTMKAC 1 cut(s) 2010
XmnI GAANNNNTTC 2 cut(s) 624, 1254
XspI CTAG 5 cut(s) 159, 677, 783, 992, 1671
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.