Rh4BG146000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000290
Physical Location & Seq
Reverse (-)
26125515 .. 26127009
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG146000.1

Sequence Viewer

Length: 675 bp
ATGACGACCACTGAATTAGCCAAAGGAAAAAGCAGAGGGAAGCGAACTTTGGTTGCAATGTACAAGGTAGTGGTGAAGAAAGCACTTGGGAAGAAATTCAAAGTTACATTCAGCGACACGGGCAATCCAAATGGCAGAACACGGCACACTCTACAGTCATATATAGGCATGTTGGTGCGGACAATGGTTCCCATCAACGTGGAAAGCTGGCCTGAGGTGGATCCTGATTTGAAACAAAATATTTGGACAGATATTCAGAAAAAGAATTTGCCTGAAGGAGAGGTAATTGATCGTGCAATTATGTGGAAGAAAGCCCGTATACCAAAAAATGGAAAGATAGATGAAGAACTGTCATTAGTGACAACAAAAATAGATGAACTGTTGGAGAAGAAGAGTAAAGGTGAGTTGGAAATCTCAGGGAGCAGTGATGTCCTGTCTCAAGCTCTAGAAACGCCTGAACACTTGGGTAGGGTGAGGGGTGTTGGAGGCTTCGTCAACCCATCCTCCTACTTTAATATGCCAAAGCAGAAAAGGATTCGACTTACTAAGGCAGATATGTTGGCCCGTGATAAGGAGCGTGATAAAGAGTTGGAGGACACAAAGAATATGCTTCTTGCGCAGCAAGCAAAGACGGAAGCAATGTCATATCAAAGGATTGCACAGCTAGAAGCACTA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

225

Amino Acids

25.49

Weight (kDa)

9.67

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 329
AccI GTMKAC 1 cut(s) 319
AciI CCGC 1 cut(s) 178
AclWI GGATC 2 cut(s) 215, 228
AcsI RAATTY 2 cut(s) 95, 265
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 329, 571
AgsI TTSAA 2 cut(s) 100, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 3 cut(s) 207, 443, 664
AluI AGCT 3 cut(s) 207, 443, 664
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 2 cut(s) 215, 228
AoxI GGCC 2 cut(s) 209, 561
ApeKI GCWGC 1 cut(s) 619
ApoI RAATTY 2 cut(s) 95, 265
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 85, 413, 484
AxyI CCTNAGG 1 cut(s) 213
BamHI GGATCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 200, 508
BceAI ACGGC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 446, 665
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 620
BlsI GCNGC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 189, 222
BpuEI CTTGAG 1 cut(s) 423
BsaXI ACNNNNNCTCC 4 cut(s) 477, 488, 507, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 571
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 2 cut(s) 63, 645
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 329, 571
BseMI GCAATG 2 cut(s) 63, 645
BseMII CTCAG 2 cut(s) 204, 429
BseXI GCAGC 1 cut(s) 631
BshFI GGCC 2 cut(s) 211, 563
BslI CCNNNNNNNGG 2 cut(s) 329, 571
BsmAI GTCTC 1 cut(s) 441
BsnI GGCC 2 cut(s) 211, 563
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 220, 289
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 211, 563
BspCNI CTCAG 2 cut(s) 205, 428
BspLI GGNNCC 2 cut(s) 189, 222
BspPI GGATC 2 cut(s) 215, 228
BsrDI GCAATG 2 cut(s) 63, 645
BsrGI TGTACA 1 cut(s) 60
BssMI GATC 2 cut(s) 220, 289
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 156, 351, 381
Bst6I CTCTTC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 209, 624
BstDEI CTNAG 3 cut(s) 213, 415, 546
BstF5I GGATG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 223, 292
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 220, 289
BstMWI GCNNNNNNNGC 3 cut(s) 120, 616, 623
BstNSI RCATGY 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 320
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 211, 563
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 9, 430
Cac8I GCNNGC 2 cut(s) 209, 624
CfoI GCGC 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 20, 207, 211, 314, 443, 489, 563, 664
CviKI_1 RGCY 8 cut(s) 20, 207, 211, 314, 443, 489, 563, 664
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 3 cut(s) 213, 415, 546
DpnI GATC 2 cut(s) 222, 291
DpnII GATC 2 cut(s) 220, 289
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 294
Eco81I CCTNAGG 1 cut(s) 213
FaeI CATG 1 cut(s) 172
FatI CATG 1 cut(s) 168
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 620
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 620
FspBI CTAG 2 cut(s) 446, 665
FspI TGCGCA 1 cut(s) 618
GlaI GCGC 1 cut(s) 618
GluI GCNGC 1 cut(s) 620
HaeIII GGCC 2 cut(s) 211, 563
HhaI GCGC 1 cut(s) 619
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 535
HphI GGTGA 3 cut(s) 85, 413, 484
Hpy166II GTNNAC 2 cut(s) 320, 496
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 224, 446
Hpy8I GTNNAC 2 cut(s) 320, 496
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 156, 351, 381
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 56, 296, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 616, 623
HpyF3I CTNAG 3 cut(s) 213, 415, 546
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 220, 289
LmnI GCTCC 2 cut(s) 420, 574
LpnPI CCDG 7 cut(s) 193, 225, 237, 285, 402, 446, 468
Lsp1109I GCAGC 1 cut(s) 631
MaeI CTAG 2 cut(s) 446, 665
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 103, 358
MalI GATC 2 cut(s) 222, 291
MboI GATC 2 cut(s) 220, 289
MboII GAAGA 6 cut(s) 88, 103, 319, 356, 400, 403
MflI RGATCY 1 cut(s) 220
MluCI AATT 5 cut(s) 14, 95, 265, 285, 297
MmeI TCCRAC 4 cut(s) 363, 387, 463, 570
MnlI CCTC 7 cut(s) 29, 208, 274, 468, 479, 514, 586
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 2 cut(s) 173, 197
MwoI GCNNNNNNNGC 3 cut(s) 120, 616, 623
NdeII GATC 2 cut(s) 220, 289
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 189, 222
NmuCI GTSAC 1 cut(s) 358
NsbI TGCGCA 1 cut(s) 618
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 535
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 189, 222
PspPI GGNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 2 cut(s) 173, 197
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 1 cut(s) 620
Sau3AI GATC 2 cut(s) 220, 289
Sau96I GGNCC 1 cut(s) 562
SetI ASST 8 cut(s) 69, 201, 209, 219, 285, 403, 445, 666
SfcI CTRYAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 173, 197
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 5 cut(s) 14, 95, 265, 285, 297
SsiI CCGC 1 cut(s) 178
SspI AATATT 1 cut(s) 241
SspMI CTAG 2 cut(s) 446, 665
TaaI ACNGT 3 cut(s) 156, 351, 381
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 538
TasI AATT 5 cut(s) 14, 95, 265, 285, 297
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 2 cut(s) 16, 430
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 619
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 357, 390
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 2 cut(s) 16, 430
Van91I CCANNNNNTGG 1 cut(s) 329
XapI RAATTY 2 cut(s) 95, 265
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 446, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.