Rh3CG306700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000290
Physical Location & Seq
Reverse (-)
32023248 .. 32033986
10739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG306700.1

Sequence Viewer

Length: 906 bp
ATGTGTGAAGCTGCCTTCAATGAAGGTGATTATGATAAGGAGTCGTATGAGTTCAGTAGTTCAGTTGGTGTTCCTAAGGGTCCATCTAAGCTCTCTGGCCCACTTTCGGGTGCGAAGCTGAAGTCAATAGATGAAGAAGTCAGAGACCAGGCACATCTTCATGTGTTGTTCAATAATGCTGAGGTGGATCCATATAGAAACGCACATAAGGAGATTGTGGAGCAGCTTTGGGGAGGGAAGAAGAAGAGCAAAAAGTGGCTACAAATTCACCGCTCCAAGAGAGTAGCAATGGGTTCCAAGAAGGGAATTCGAAAGTCACCAAGAGGCAAAAAATTAAAGAGAAAAGCTGATCTGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGAAGAATCTGTATCAGCCAACACTATCACGAGCACCGAATCAGTCAAAACCAGAGGGAAGCGTAATGTGGTAGCACTGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTATCATACACCGAGACGGGCAATCCAAATGGAAGAATCAGACACACTCTACAGTCTTACATAGGAATGTTGGCGCGGACCAAGGTGCCCATCAATATTGTAAGCTGGCCCGAAGTGGATGGTGACTTGAAGGATAAACTTTGGCTTGATGTTCAGAGAAAGACGTTGCCCGAAGGAGAGGTCATTGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGAAAAGATGGGGACATAGATGAGGAGGCTAGAGGTGTGGCCACAAAGATAGATGATTTGTTGGAAAAGAAAAGTAAGGGTGAGCTTGAGATCTCAGGGAGTAGTGATGTTCTTTCTCAAGCATTAGAAACTCCTGAACACTCGGGTACTACAGTATTACTCCACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

301

Amino Acids

33.77

Weight (kDa)

9.41

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 1 cut(s) 592
AciI CCGC 2 cut(s) 271, 592
AclWI GGATC 2 cut(s) 182, 195
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 264, 306
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 476, 883
AfiI CCNNNNNNNGG 2 cut(s) 106, 107
AgsI TTSAA 4 cut(s) 19, 172, 389, 646
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 8 cut(s) 11, 91, 118, 226, 347, 497, 621, 820
AluI AGCT 8 cut(s) 11, 91, 118, 226, 347, 497, 621, 820
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 4 cut(s) 138, 350, 365, 524
AlwI GGATC 2 cut(s) 182, 195
Ama87I CYCGRG 1 cut(s) 877
AoxI GGCC 3 cut(s) 97, 623, 774
ApeKI GCWGC 2 cut(s) 11, 223
ApoI RAATTY 2 cut(s) 264, 306
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 681, 713
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 4 cut(s) 80, 98, 594, 624
AsuHPI GGTGA 5 cut(s) 38, 260, 309, 650, 827
AsuII TTCGAA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 877
AvaII GGWCC 2 cut(s) 80, 594
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 873, 906
BalI TGGCCA 1 cut(s) 776
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 601
BauI CACGAG 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 235
BccI CCATC 4 cut(s) 91, 614, 629, 737
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 4 cut(s) 138, 350, 365, 524
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 2 cut(s) 566, 885
BglII AGATCT 1 cut(s) 825
BisI GCNGC 2 cut(s) 12, 224
BlsI GCNGC 2 cut(s) 13, 225
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 80, 594
BmeT110I CYCGRG 1 cut(s) 877
BmgT120I GGNCC 4 cut(s) 80, 98, 594, 624
BmiI GGNNCC 4 cut(s) 81, 189, 295, 603
BmrFI CCNGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 2 cut(s) 837, 842
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 597
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 107
Bse21I CCTNAGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 106, 107
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 171, 360, 843
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 592
BshFI GGCC 3 cut(s) 99, 625, 776
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 877
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 2 cut(s) 106, 107
BsmAI GTCTC 4 cut(s) 138, 350, 365, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 3 cut(s) 99, 625, 776
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 877
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 431, 606
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 4 cut(s) 187, 349, 703, 825
BspACI CCGC 2 cut(s) 271, 592
BspANI GGCC 3 cut(s) 99, 625, 776
BspCNI CTCAG 3 cut(s) 172, 361, 842
BspFNI CGCG 1 cut(s) 592
BspLI GGNNCC 4 cut(s) 81, 189, 295, 603
BspPI GGATC 2 cut(s) 182, 195
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 4 cut(s) 187, 349, 703, 825
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 474, 570, 889
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 5 cut(s) 75, 87, 180, 369, 829
BstF5I GGATG 1 cut(s) 640
BstFNI CGCG 1 cut(s) 592
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 4 cut(s) 190, 352, 706, 828
BstMAI GTCTC 4 cut(s) 138, 350, 365, 524
BstMBI GATC 4 cut(s) 187, 349, 703, 825
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 2 cut(s) 566, 885
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 592
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 187, 825
BstYI RGATCY 2 cut(s) 187, 825
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 3 cut(s) 99, 625, 776
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 623
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 4 cut(s) 80, 98, 594, 624
Csp6I GTAC 2 cut(s) 475, 882
CviAII CATG 1 cut(s) 161
CviQI GTAC 2 cut(s) 475, 882
DdeI CTNAG 5 cut(s) 75, 87, 180, 369, 829
DpnI GATC 4 cut(s) 189, 351, 705, 827
DpnII GATC 4 cut(s) 187, 349, 703, 825
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 80, 594
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 877
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 1 cut(s) 164
FaqI GGGAC 1 cut(s) 761
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 12, 224
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 2 cut(s) 12, 224
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 591
GluI GCNGC 2 cut(s) 12, 224
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 3 cut(s) 99, 625, 776
HhaI GCGC 1 cut(s) 592
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 4 cut(s) 41, 401, 434, 552
HphI GGTGA 5 cut(s) 38, 260, 309, 650, 827
Hpy166II GTNNAC 1 cut(s) 734
Hpy188I TCNGA 3 cut(s) 143, 557, 672
Hpy188III TCNNGA 4 cut(s) 353, 424, 490, 869
Hpy8I GTNNAC 1 cut(s) 734
HpyAV CCTTC 5 cut(s) 17, 25, 295, 640, 683
HpyCH4III ACNGT 3 cut(s) 474, 570, 889
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 1 cut(s) 710
HpyF3I CTNAG 5 cut(s) 75, 87, 180, 369, 829
HpySE526I ACGT 1 cut(s) 680
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 4 cut(s) 187, 349, 703, 825
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 220, 278
LpnPI CCDG 9 cut(s) 81, 134, 161, 338, 381, 460, 607, 816, 882
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 2 cut(s) 315, 638
MalI GATC 4 cut(s) 189, 351, 705, 827
MbiI CCGCTC 1 cut(s) 273
MboI GATC 4 cut(s) 187, 349, 703, 825
MboII GAAGA 9 cut(s) 146, 149, 250, 253, 256, 401, 410, 561, 733
MflI RGATCY 2 cut(s) 187, 825
MhlI GDGCHC 2 cut(s) 431, 606
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 4 cut(s) 264, 306, 332, 711
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 777
MnlI CCTC 8 cut(s) 175, 227, 317, 443, 688, 751, 754, 761
Mox20I TGGCCA 1 cut(s) 776
MscI TGGCCA 1 cut(s) 776
MseI TTAA 2 cut(s) 335, 513
MslI CAYNNNNRTG 2 cut(s) 159, 581
Msp20I TGGCCA 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 592
NdeII GATC 4 cut(s) 187, 349, 703, 825
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 4 cut(s) 81, 189, 295, 603
NmuCI GTSAC 2 cut(s) 315, 638
NspV TTCGAA 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 239
PfeI GAWTC 3 cut(s) 401, 434, 552
PkrI GCNGC 2 cut(s) 13, 225
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 4 cut(s) 81, 189, 295, 603
PspPI GGNCC 4 cut(s) 80, 98, 594, 624
PsuI RGATCY 2 cut(s) 187, 825
RsaI GTAC 2 cut(s) 476, 883
RsaNI GTAC 2 cut(s) 475, 882
RseI CAYNNNNRTG 2 cut(s) 159, 581
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 335, 513
SatI GCNGC 2 cut(s) 12, 224
Sau3AI GATC 4 cut(s) 187, 349, 703, 825
Sau96I GGNCC 4 cut(s) 80, 98, 594, 624
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 431, 606
SfcI CTRYAG 2 cut(s) 566, 885
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 2 cut(s) 80, 594
SmiMI CAYNNNNRTG 2 cut(s) 159, 581
SmlI CTYRAG 2 cut(s) 821, 852
SmoI CTYRAG 2 cut(s) 821, 852
Sse9I AATT 4 cut(s) 264, 306, 332, 711
SsiI CCGC 2 cut(s) 271, 592
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 474, 570, 889
TaiI ACGT 1 cut(s) 683
TaqI TCGA 1 cut(s) 310
TasI AATT 4 cut(s) 264, 306, 332, 711
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 3 cut(s) 401, 434, 552
Tru1I TTAA 2 cut(s) 335, 513
Tru9I TTAA 2 cut(s) 335, 513
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 2 cut(s) 315, 638
TseI GCWGC 2 cut(s) 11, 223
Tsp45I GTSAC 2 cut(s) 315, 638
TspDTI ATGAA 4 cut(s) 36, 147, 149, 393
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 80, 594
XapI RAATTY 2 cut(s) 264, 306
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.