Rmu_sc0000147.1_g000094

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000147.1
OG0000290
Physical Location & Seq
Reverse (-)
413454 .. 416754
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000147.1_g000094.1.cds

Sequence Viewer

Length: 771 bp
atgcttaggcattttgacaaggtcaagccttcaagcacccccatgatcgtccgtagtcttgatcctgaaaaggatcatcttcgtctgaaggatgatgacgaagatgtgctagaggcagaagtgccttacttaagtacaataggcagattattagagatgatggattcggacccatcacacacccagaacgtcaccaacactggcctgctcgctatatcttcgaacaatgtagagattattgctcttcacgaagtgggtggcacatgtgagttagcagtggacaccattagcaacatagttgcttttggtactgtttttgatgaagaggatgtcagtagggtgatacatggagttccaatgaaggaggggtgtgttagggtgtctgtggatggtgccattcaagaggaagcacgacttcctttcccagtgggtgatgagatggaattggttggccaagctgttggaagtcatgtggcttggcctgaagagcttgttattcgaagagtgaataagaaaaagaaaagaaagatggattttgtcaaacaattgtttgacaaagctgagctaaactcgtttgtgcccaagcgttgtaagttgttgtacaagcatgccaagactattatgagccaaaccaatgagtcgataagcacagtgttggatgatagtgtctttggggtacagaaacagctcttcatattgactgagaatgtcattgatctcttagaaatgaataagattggccaaggagtgatagcagcatatatggcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

256

Amino Acids

28.55

Weight (kDa)

5.15

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AclWI GGATC 2 cut(s) 56, 81
AcoI YGGCCR 2 cut(s) 451, 739
AcuI CTGAAG 2 cut(s) 107, 504
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 4 cut(s) 136, 310, 602, 678
AflII CTTAAG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 33, 401
AluBI AGCT 5 cut(s) 458, 490, 560, 565, 688
AluI AGCT 5 cut(s) 458, 490, 560, 565, 688
AlwI GGATC 2 cut(s) 56, 81
AoxI GGCC 4 cut(s) 202, 451, 479, 739
ApeKI GCWGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 184, 352, 443
AsuII TTCGAA 2 cut(s) 221, 499
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 582
BalI TGGCCA 2 cut(s) 453, 741
BanI GGYRCC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 767
BccI CCATC 5 cut(s) 154, 181, 383, 433, 523
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 1 cut(s) 756
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 757
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 171, 394
BmrI ACTGGG 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 554, 586
Bpu10I CCTNAGC 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 2 cut(s) 221, 499
BsaJI CCNNGG 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 205, 425
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 4 cut(s) 97, 334, 394, 664
BseMII CTCAG 2 cut(s) 552, 693
BseNI ACTGG 2 cut(s) 205, 425
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 1 cut(s) 767
BshFI GGCC 4 cut(s) 204, 453, 481, 741
BshNI GGYRCC 1 cut(s) 392
BsnI GGCC 4 cut(s) 204, 453, 481, 741
Bsp119I TTCGAA 2 cut(s) 221, 499
Bsp1286I GDGCHC 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 4 cut(s) 45, 61, 73, 715
Bsp1720I GCTNAGC 1 cut(s) 561
BspANI GGCC 4 cut(s) 204, 453, 481, 741
BspCNI CTCAG 2 cut(s) 553, 694
BspLI GGNNCC 2 cut(s) 171, 394
BspPI GGATC 2 cut(s) 56, 81
BspQI GCTCTTC 3 cut(s) 249, 480, 695
BspT104I TTCGAA 2 cut(s) 221, 499
BspT107I GGYRCC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 2 cut(s) 205, 425
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 4 cut(s) 45, 61, 73, 715
BssT1I CCWWGG 1 cut(s) 742
Bst4CI ACNGT 2 cut(s) 313, 652
Bst6I CTCTTC 5 cut(s) 249, 318, 480, 496, 695
BstAFI CTTAAG 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 2 cut(s) 221, 499
BstC8I GCNNGC 3 cut(s) 206, 210, 609
BstDEI CTNAG 4 cut(s) 5, 561, 702, 721
BstF5I GGATG 4 cut(s) 97, 334, 394, 664
BstKTI GATC 4 cut(s) 48, 64, 76, 718
BstMBI GATC 4 cut(s) 45, 61, 73, 715
BstMWI GCNNNNNNNGC 2 cut(s) 487, 764
BstNSI RCATGY 2 cut(s) 267, 611
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 4 cut(s) 204, 453, 481, 741
BtsCI GGATG 4 cut(s) 97, 334, 394, 664
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 198, 282, 432, 657
Cac8I GCNNGC 3 cut(s) 206, 210, 609
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 4 cut(s) 135, 309, 601, 677
CviAII CATG 5 cut(s) 43, 264, 347, 470, 608
CviQI GTAC 4 cut(s) 135, 309, 601, 677
DdeI CTNAG 4 cut(s) 5, 561, 702, 721
DpnI GATC 4 cut(s) 47, 63, 75, 717
DpnII GATC 4 cut(s) 45, 61, 73, 715
DraIII CACNNNGTG 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 451, 739
Eam1104I CTCTTC 5 cut(s) 249, 318, 480, 496, 695
EarI CTCTTC 5 cut(s) 249, 318, 480, 496, 695
Eco130I CCWWGG 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 107, 504
EcoT14I CCWWGG 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 5 cut(s) 46, 267, 350, 473, 611
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 5 cut(s) 42, 263, 346, 469, 607
Fnu4HI GCNGC 1 cut(s) 756
FokI GGATG 4 cut(s) 104, 341, 401, 671
Fsp4HI GCNGC 1 cut(s) 756
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 756
HaeIII GGCC 4 cut(s) 204, 453, 481, 741
Hin1II CATG 5 cut(s) 46, 267, 350, 473, 611
HinfI GANTC 2 cut(s) 164, 638
HphI GGTGA 3 cut(s) 184, 352, 443
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 87, 169
Hpy188III TCNNGA 4 cut(s) 59, 65, 248, 401
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 39, 82, 355
HpyCH4III ACNGT 2 cut(s) 313, 652
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 764
HpyF3I CTNAG 4 cut(s) 5, 561, 702, 721
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 5 cut(s) 46, 267, 350, 473, 611
Kzo9I GATC 4 cut(s) 45, 61, 73, 715
LguI GCTCTTC 3 cut(s) 249, 480, 695
LpnPI CCDG 6 cut(s) 78, 186, 197, 218, 438, 495
Lsp1109I GCAGC 1 cut(s) 767
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 190
MalI GATC 4 cut(s) 47, 63, 75, 717
MboI GATC 4 cut(s) 45, 61, 73, 715
MboII GAAGA 8 cut(s) 71, 113, 210, 236, 335, 497, 513, 682
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 2 cut(s) 453, 741
MluCI AATT 2 cut(s) 443, 545
MluNI TGGCCA 2 cut(s) 453, 741
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 442, 636
MnlI CCTC 4 cut(s) 106, 319, 358, 397
Mox20I TGGCCA 2 cut(s) 453, 741
MscI TGGCCA 2 cut(s) 453, 741
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 2 cut(s) 453, 741
MspCI CTTAAG 1 cut(s) 130
MunI CAATTG 1 cut(s) 545
MwoI GCNNNNNNNGC 2 cut(s) 487, 764
NdeII GATC 4 cut(s) 45, 61, 73, 715
NlaIII CATG 5 cut(s) 46, 267, 350, 473, 611
NlaIV GGNNCC 2 cut(s) 171, 394
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 2 cut(s) 267, 611
NspV TTCGAA 2 cut(s) 221, 499
PaeI GCATGC 1 cut(s) 611
PciI ACATGT 1 cut(s) 263
PciSI GCTCTTC 3 cut(s) 249, 480, 695
PfeI GAWTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 757
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PscI ACATGT 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 171, 394
PspPI GGNCC 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 4 cut(s) 136, 310, 602, 678
RsaNI GTAC 4 cut(s) 135, 309, 601, 677
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 3 cut(s) 249, 480, 695
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 756
Sau3AI GATC 4 cut(s) 45, 61, 73, 715
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 647
SduI GDGCHC 1 cut(s) 582
SetI ASST 7 cut(s) 24, 192, 460, 492, 562, 567, 690
SfuI TTCGAA 2 cut(s) 221, 499
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 1 cut(s) 611
Sse9I AATT 2 cut(s) 443, 545
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 2 cut(s) 313, 652
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 221, 499, 641
TasI AATT 2 cut(s) 443, 545
TatI WGTACW 2 cut(s) 134, 600
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 4 cut(s) 205, 282, 432, 657
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 336, 374, 682, 743
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 4 cut(s) 205, 282, 432, 657
Tth111I GACNNNGTC 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 2 cut(s) 267, 611
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.