Rh5CG532300

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000290
Physical Location & Seq
Reverse (-)
74538242 .. 74551747
13506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG532300.1

Sequence Viewer

Length: 672 bp
ATGGGTTCGAAGAAGAAGGAAAAGGCTGAAAGTGATAAAAAGTCAAAGAAACATTCTGATTTGGAGACTTGTTCTGAGGCTGACAAGGTGGCTGATAAGAAAGCAGAATCTGAATCTGCAGAGACCATCACAAGCACCGAATCAACTAAAAGAAGAGGGAAGCGAAGTGTGGTGGAAATGTATAAGGTTGTGATCAAGAAAGCTTTGGGAAAAAAATTTAAAGTGACATACACCGACACGGGGAATCCCAATGGACGAGTACGACACACTTTGCAATCATATATAGGGATGCTCGCGCGGAAAATGGTGCCCATTAACATTGTAAGCTGGCCCGAAGTAGACGGTGAATTGAAAGATAAAATTTGGATCGACGTCCAGAAACTTCATAATGACCAAAGCAAACAAGTCAAGAAGAGAAAATACCATCATAGATTATCAAGAAAGGGATATATTGGACTAGAGGAGGAATTGAAACATTCTTGGCCTGAAGGAGAGGTTATTGACCGTGCAATTCTATGGAAGAAGGCCCGTGTACTTAAAAATGGGGAGATAAGTGAGGAAGTGACACCGATTGCAACAAAGATAACTCTAAATGAGATGATCAAGACAAGTACGTCTACCAATGGAATGCATAGAATTTTCTCTGCTATGTCATGTGAAAATACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

223

Amino Acids

25.4

Weight (kDa)

9.66

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 613
AatII GACGTC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 339, 617
AccII CGCG 2 cut(s) 296, 298
AciI CCGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 3 cut(s) 215, 360, 636
AcuI CTGAAG 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 3 cut(s) 261, 534, 613
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 352, 472
AluBI AGCT 2 cut(s) 203, 327
AluI AGCT 2 cut(s) 203, 327
Alw26I GTCTC 2 cut(s) 59, 116
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 3 cut(s) 329, 482, 525
ApoI RAATTY 3 cut(s) 215, 360, 636
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 330, 526
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BccI CCATC 2 cut(s) 134, 432
BclI TGATCA 2 cut(s) 192, 600
BcoDI GTCTC 2 cut(s) 59, 116
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 330, 526
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 296, 298
BshFI GGCC 3 cut(s) 331, 484, 527
BshNI GGYRCC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 2 cut(s) 59, 116
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 3 cut(s) 331, 484, 527
Bso31I GGTCTC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 192, 366, 600
BspACI CCGC 1 cut(s) 298
BspANI GGCC 3 cut(s) 331, 484, 527
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 2 cut(s) 296, 298
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 116
BssMI GATC 3 cut(s) 192, 366, 600
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 344, 506
Bst6I CTCTTC 2 cut(s) 148, 407
BstACI GRCGYC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 294, 329
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 296, 298
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 3 cut(s) 195, 369, 603
BstMAI GTCTC 2 cut(s) 59, 116
BstMBI GATC 3 cut(s) 192, 366, 600
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 296, 298
BsuRI GGCC 3 cut(s) 331, 484, 527
BtsCI GGATG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 294, 329
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 330, 526
Csp6I GTAC 3 cut(s) 260, 533, 612
CviAII CATG 1 cut(s) 654
CviJI RGCY 8 cut(s) 26, 80, 92, 203, 327, 331, 484, 527
CviKI_1 RGCY 8 cut(s) 26, 80, 92, 203, 327, 331, 484, 527
CviQI GTAC 3 cut(s) 260, 533, 612
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 194, 368, 602
DpnII GATC 3 cut(s) 192, 366, 600
DraI TTTAAA 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 148, 407
EarI CTCTTC 2 cut(s) 148, 407
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 633
FaeI CATG 1 cut(s) 657
FatI CATG 1 cut(s) 653
FbaI TGATCA 2 cut(s) 192, 600
FblI GTMKAC 2 cut(s) 339, 617
FokI GGATG 1 cut(s) 301
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 297
HaeIII GGCC 3 cut(s) 331, 484, 527
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 657
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 4 cut(s) 107, 113, 140, 244
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 340, 533, 618
Hpy188I TCNGA 3 cut(s) 58, 76, 112
Hpy188III TCNNGA 5 cut(s) 196, 376, 409, 438, 604
Hpy8I GTNNAC 3 cut(s) 340, 533, 618
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 10, 482, 517
HpyCH4III ACNGT 2 cut(s) 344, 506
HpyCH4IV ACGT 2 cut(s) 372, 614
HpyCH4V TGCA 6 cut(s) 119, 274, 509, 575, 631, 668
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 372, 614
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 657
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 2 cut(s) 192, 600
Kzo9I GATC 3 cut(s) 192, 366, 600
LpnPI CCDG 3 cut(s) 313, 389, 498
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 458
MaeII ACGT 2 cut(s) 372, 614
MaeIII GTNAC 2 cut(s) 223, 562
MalI GATC 3 cut(s) 194, 368, 602
MboI GATC 3 cut(s) 192, 366, 600
MboII GAAGA 5 cut(s) 22, 25, 165, 424, 532
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 6 cut(s) 215, 347, 360, 467, 510, 636
MnlI CCTC 6 cut(s) 70, 149, 454, 457, 487, 550
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 3 cut(s) 219, 315, 537
Mva1269I GAATGC 1 cut(s) 633
MvnI CGCG 2 cut(s) 296, 298
NdeII GATC 3 cut(s) 192, 366, 600
NlaIII CATG 1 cut(s) 657
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 223, 562
NsiI ATGCAT 1 cut(s) 633
NspV TTCGAA 1 cut(s) 8
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 107, 113, 140, 244
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 330, 526
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 261, 534, 613
RsaNI GTAC 3 cut(s) 260, 533, 612
SaqAI TTAA 3 cut(s) 219, 315, 537
Sau3AI GATC 3 cut(s) 192, 366, 600
Sau96I GGNCC 2 cut(s) 330, 526
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 90, 189, 205, 329, 375, 498, 617
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 6 cut(s) 215, 347, 360, 467, 510, 636
SsiI CCGC 1 cut(s) 298
SspMI CTAG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 344, 506
TaiI ACGT 2 cut(s) 375, 617
TaqI TCGA 2 cut(s) 8, 369
TasI AATT 6 cut(s) 215, 347, 360, 467, 510, 636
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 4 cut(s) 107, 113, 140, 244
Tru1I TTAA 3 cut(s) 219, 315, 537
Tru9I TTAA 3 cut(s) 219, 315, 537
TseFI GTSAC 2 cut(s) 223, 562
Tsp45I GTSAC 2 cut(s) 223, 562
TspDTI ATGAA 1 cut(s) 374
XapI RAATTY 3 cut(s) 215, 360, 636
XmiI GTMKAC 2 cut(s) 339, 617
XspI CTAG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.