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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 313 |
| AccI | GTMKAC | 2 cut(s) | 618, 626 |
| AclWI | GGATC | 1 cut(s) | 268 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AcuI | CTGAAG | 1 cut(s) | 420 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AflIII | ACRYGT | 1 cut(s) | 621 |
| AgsI | TTSAA | 3 cut(s) | 101, 358, 591 |
| AjiI | CACGTC | 1 cut(s) | 343 |
| AleI | CACNNNNGTG | 1 cut(s) | 717 |
| AluBI | AGCT | 5 cut(s) | 152, 209, 333, 482, 501 |
| AluI | AGCT | 5 cut(s) | 152, 209, 333, 482, 501 |
| Alw21I | GWGCWC | 1 cut(s) | 143 |
| Alw26I | GTCTC | 2 cut(s) | 62, 77 |
| AlwI | GGATC | 1 cut(s) | 268 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 335, 581 |
| ApeKI | GCWGC | 3 cut(s) | 152, 155, 704 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| AspLEI | GCGC | 1 cut(s) | 709 |
| AsuHPI | GGTGA | 2 cut(s) | 362, 499 |
| AsuII | TTCGAA | 1 cut(s) | 555 |
| BaeGI | GKGCMC | 1 cut(s) | 318 |
| BanI | GGYRCC | 1 cut(s) | 313 |
| BauI | CACGAG | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 1 cut(s) | 143 |
| BbvI | GCAGC | 3 cut(s) | 139, 142, 716 |
| BccI | CCATC | 2 cut(s) | 326, 449 |
| BceAI | ACGGC | 1 cut(s) | 596 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 545, 579 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BcoDI | GTCTC | 2 cut(s) | 62, 77 |
| BfaI | CTAG | 2 cut(s) | 159, 477 |
| BfmI | CTRYAG | 1 cut(s) | 278 |
| BisI | GCNGC | 3 cut(s) | 153, 156, 705 |
| BlsI | GCNGC | 3 cut(s) | 154, 157, 706 |
| BmgBI | CACGTC | 1 cut(s) | 343 |
| BmiI | GGNNCC | 2 cut(s) | 7, 315 |
| Bpu14I | TTCGAA | 1 cut(s) | 555 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 568, 598 |
| Bse3DI | GCAATG | 1 cut(s) | 504 |
| BseMI | GCAATG | 1 cut(s) | 504 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseRI | GAGGAG | 2 cut(s) | 80, 614 |
| BseSI | GKGCMC | 1 cut(s) | 318 |
| BseXI | GCAGC | 3 cut(s) | 139, 142, 716 |
| Bsh1285I | CGRYCG | 1 cut(s) | 618 |
| BshFI | GGCC | 2 cut(s) | 337, 583 |
| BshNI | GGYRCC | 1 cut(s) | 313 |
| BsiEI | CGRYCG | 1 cut(s) | 618 |
| BsiHKAI | GWGCWC | 1 cut(s) | 143 |
| BslFI | GGGAC | 1 cut(s) | 473 |
| BsmAI | GTCTC | 2 cut(s) | 62, 77 |
| BsmFI | GGGAC | 1 cut(s) | 473 |
| BsnI | GGCC | 2 cut(s) | 337, 583 |
| Bsp119I | TTCGAA | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 2 cut(s) | 143, 318 |
| Bsp1407I | TGTACA | 1 cut(s) | 186 |
| Bsp143I | GATC | 3 cut(s) | 260, 415, 646 |
| BspANI | GGCC | 2 cut(s) | 337, 583 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspLI | GGNNCC | 2 cut(s) | 7, 315 |
| BspPI | GGATC | 1 cut(s) | 268 |
| BspT104I | TTCGAA | 1 cut(s) | 555 |
| BspT107I | GGYRCC | 1 cut(s) | 313 |
| BsrDI | GCAATG | 1 cut(s) | 504 |
| BsrGI | TGTACA | 1 cut(s) | 186 |
| BssMI | GATC | 3 cut(s) | 260, 415, 646 |
| BssSI | CACGAG | 1 cut(s) | 136 |
| Bst2BI | CACGAG | 1 cut(s) | 136 |
| Bst4CI | ACNGT | 4 cut(s) | 133, 282, 350, 695 |
| Bst6I | CTCTTC | 1 cut(s) | 465 |
| BstAUI | TGTACA | 1 cut(s) | 186 |
| BstBI | TTCGAA | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 1 cut(s) | 335 |
| BstDEI | CTNAG | 2 cut(s) | 81, 309 |
| BstHHI | GCGC | 1 cut(s) | 709 |
| BstKTI | GATC | 3 cut(s) | 263, 418, 649 |
| BstMAI | GTCTC | 2 cut(s) | 62, 77 |
| BstMBI | GATC | 3 cut(s) | 260, 415, 646 |
| BstMCI | CGRYCG | 1 cut(s) | 618 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstSFI | CTRYAG | 1 cut(s) | 278 |
| BstSLI | GKGCMC | 1 cut(s) | 318 |
| BstV1I | GCAGC | 3 cut(s) | 139, 142, 716 |
| BsuRI | GGCC | 2 cut(s) | 337, 583 |
| BtrI | CACGTC | 1 cut(s) | 343 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 335 |
| CaiI | CAGNNNCTG | 1 cut(s) | 155 |
| CfoI | GCGC | 1 cut(s) | 709 |
| CseI | GACGC | 1 cut(s) | 637 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CviAII | CATG | 3 cut(s) | 184, 543, 622 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DdeI | CTNAG | 2 cut(s) | 81, 309 |
| DpnI | GATC | 3 cut(s) | 262, 417, 648 |
| DpnII | GATC | 3 cut(s) | 260, 415, 646 |
| DraI | TTTAAA | 1 cut(s) | 226 |
| Eam1104I | CTCTTC | 1 cut(s) | 465 |
| EarI | CTCTTC | 1 cut(s) | 465 |
| Eco32I | GATATC | 1 cut(s) | 612 |
| Eco57I | CTGAAG | 1 cut(s) | 420 |
| EcoRI | GAATTC | 1 cut(s) | 18 |
| EcoRV | GATATC | 1 cut(s) | 612 |
| FaeI | CATG | 3 cut(s) | 187, 546, 625 |
| FaqI | GGGAC | 1 cut(s) | 473 |
| FatI | CATG | 3 cut(s) | 183, 542, 621 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| FblI | GTMKAC | 2 cut(s) | 618, 626 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 156, 705 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 156, 705 |
| FspBI | CTAG | 2 cut(s) | 159, 477 |
| GlaI | GCGC | 1 cut(s) | 708 |
| GluI | GCNGC | 3 cut(s) | 153, 156, 705 |
| HaeIII | GGCC | 2 cut(s) | 337, 583 |
| HgaI | GACGC | 1 cut(s) | 637 |
| HhaI | GCGC | 1 cut(s) | 709 |
| Hin1II | CATG | 3 cut(s) | 187, 546, 625 |
| Hin6I | GCGC | 1 cut(s) | 707 |
| HinP1I | GCGC | 1 cut(s) | 707 |
| HincII | GTYRAC | 3 cut(s) | 446, 619, 627 |
| HindII | GTYRAC | 3 cut(s) | 446, 619, 627 |
| HindIII | AAGCTT | 1 cut(s) | 207 |
| HinfI | GANTC | 1 cut(s) | 113 |
| HphI | GGTGA | 2 cut(s) | 362, 499 |
| Hpy166II | GTNNAC | 4 cut(s) | 346, 446, 619, 627 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 591 |
| Hpy8I | GTNNAC | 4 cut(s) | 346, 446, 619, 627 |
| Hpy99I | CGWCG | 1 cut(s) | 631 |
| HpyAV | CCTTC | 5 cut(s) | 7, 352, 395, 579, 597 |
| HpyCH4III | ACNGT | 4 cut(s) | 133, 282, 350, 695 |
| HpyCH4IV | ACGT | 2 cut(s) | 342, 448 |
| HpyCH4V | TGCA | 2 cut(s) | 422, 670 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 309 |
| HpySE526I | ACGT | 2 cut(s) | 342, 448 |
| Hsp92II | CATG | 3 cut(s) | 187, 546, 625 |
| HspAI | GCGC | 1 cut(s) | 707 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 260, 415, 646 |
| LmnI | GCTCC | 1 cut(s) | 571 |
| LpnPI | CCDG | 4 cut(s) | 93, 319, 351, 411 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 142, 716 |
| MaeI | CTAG | 2 cut(s) | 159, 477 |
| MaeII | ACGT | 2 cut(s) | 342, 448 |
| MaeIII | GTNAC | 8 cut(s) | 133, 229, 350, 487, 538, 695, 730, 751 |
| MalI | GATC | 3 cut(s) | 262, 417, 648 |
| MboI | GATC | 3 cut(s) | 260, 415, 646 |
| MboII | GAAGA | 3 cut(s) | 113, 445, 482 |
| MhlI | GDGCHC | 2 cut(s) | 143, 318 |
| MluCI | AATT | 3 cut(s) | 18, 423, 778 |
| MnlI | CCTC | 9 cut(s) | 29, 58, 155, 400, 466, 592, 594, 595, 694 |
| MseI | TTAA | 3 cut(s) | 225, 381, 790 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| NdeII | GATC | 3 cut(s) | 260, 415, 646 |
| NlaIII | CATG | 3 cut(s) | 187, 546, 625 |
| NlaIV | GGNNCC | 2 cut(s) | 7, 315 |
| NmuCI | GTSAC | 5 cut(s) | 133, 229, 350, 487, 695 |
| NspI | RCATGY | 1 cut(s) | 625 |
| NspV | TTCGAA | 1 cut(s) | 555 |
| OliI | CACNNNNGTG | 1 cut(s) | 717 |
| PciI | ACATGT | 1 cut(s) | 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 781 |
| PfeI | GAWTC | 1 cut(s) | 113 |
| PkrI | GCNGC | 3 cut(s) | 154, 157, 706 |
| PscI | ACATGT | 1 cut(s) | 621 |
| PspN4I | GGNNCC | 2 cut(s) | 7, 315 |
| PstNI | CAGNNNCTG | 1 cut(s) | 155 |
| PvuII | CAGCTG | 1 cut(s) | 152 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SalI | GTCGAC | 2 cut(s) | 617, 625 |
| SaqAI | TTAA | 3 cut(s) | 225, 381, 790 |
| SatI | GCNGC | 3 cut(s) | 153, 156, 705 |
| Sau3AI | GATC | 3 cut(s) | 260, 415, 646 |
| SduI | GDGCHC | 2 cut(s) | 143, 318 |
| SfcI | CTRYAG | 1 cut(s) | 278 |
| SfuI | TTCGAA | 1 cut(s) | 555 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| Sse9I | AATT | 3 cut(s) | 18, 423, 778 |
| SspMI | CTAG | 2 cut(s) | 159, 477 |
| TaaI | ACNGT | 4 cut(s) | 133, 282, 350, 695 |
| TaiI | ACGT | 2 cut(s) | 345, 451 |
| TaqI | TCGA | 4 cut(s) | 375, 555, 618, 626 |
| TaqII | GACCGA | 1 cut(s) | 604 |
| TasI | AATT | 3 cut(s) | 18, 423, 778 |
| TatI | WGTACW | 1 cut(s) | 186 |
| TfiI | GAWTC | 1 cut(s) | 113 |
| Tru1I | TTAA | 3 cut(s) | 225, 381, 790 |
| Tru9I | TTAA | 3 cut(s) | 225, 381, 790 |
| TscAI | CASTG | 1 cut(s) | 136 |
| TseFI | GTSAC | 5 cut(s) | 133, 229, 350, 487, 695 |
| TseI | GCWGC | 3 cut(s) | 152, 155, 704 |
| Tsp45I | GTSAC | 5 cut(s) | 133, 229, 350, 487, 695 |
| TspDTI | ATGAA | 3 cut(s) | 105, 483, 501 |
| TspGWI | ACGGA | 1 cut(s) | 319 |
| TspRI | CASTG | 1 cut(s) | 136 |
| XapI | RAATTY | 1 cut(s) | 18 |
| XceI | RCATGY | 1 cut(s) | 625 |
| XmiI | GTMKAC | 2 cut(s) | 618, 626 |
| XspI | CTAG | 2 cut(s) | 159, 477 |