Rh3AG323800

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000290
Physical Location & Seq
Reverse (-)
45456670 .. 45504685
48016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG323800.1

Sequence Viewer

Length: 510 bp
ATGCCATCAACAGCAACCGTGACCAAGAATCCTCCACCGCCAAAATCACCTATGACCACCCCGCCGACGTCGTCATCGGGATTTGATACTGGGAAACAATCATCGAGAGACAAGACATCCAAGAAAAAAAAATCTAAAGCCAAGAATGATGAGGTGCTTGAGCCCATGGAGGACTTTCAATCAAAGGAGACTATCAACACCTCACCTTTGGTCAGAGCGAAGCGTGGTGTTACAGAAATGCATAAGAATAAATCATGCAAGCTGGCAGCGGGTTCCATTCACAATATTGTGGCTTTAGGCACAATAATTGAAGAGAATGACTCTAATATTACTGTACATGGTATTCCTTTACAAGAGGGTCATTCGAGGGTTGCTGTTGATGTGTCCATTGATGCAAATGCTTTACTTCCTGTCCCAATTCCAGATGAATTGGAGAATGTTGGTCAAGCTGTTGGGAGCCATGTGGTTTGGCCAAAGAAGCTCATTGTGTTGAATATGGAAAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

169

Amino Acids

18.19

Weight (kDa)

8.97

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 78 - 164 4.4e-16 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AciI CCGC 3 cut(s) 38, 62, 269
AcoI YGGCCR 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 336
AgsI TTSAA 3 cut(s) 179, 311, 493
AluBI AGCT 3 cut(s) 262, 449, 481
AluI AGCT 3 cut(s) 262, 449, 481
Alw26I GTCTC 2 cut(s) 102, 182
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 39, 195
BalI TGGCCA 1 cut(s) 472
BanII GRGCYC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 102, 182
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 274, 458
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 472
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 102, 182
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 3 cut(s) 38, 62, 269
BspANI GGCC 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 274, 458
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 19, 334
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 260, 264
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 116
BstMAI GTCTC 2 cut(s) 102, 182
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 472
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 260, 264
Csp6I GTAC 1 cut(s) 335
CviAII CATG 4 cut(s) 166, 255, 338, 461
CviJI RGCY 8 cut(s) 140, 163, 262, 293, 449, 459, 472, 481
CviKI_1 RGCY 8 cut(s) 140, 163, 262, 293, 449, 459, 472, 481
CviQI GTAC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 4 cut(s) 169, 258, 341, 464
FaiI YATR 8 cut(s) 53, 167, 243, 256, 339, 462, 497, 508
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 165, 254, 337, 460
FauI CCCGC 2 cut(s) 69, 262
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 169, 258, 341, 464
HinfI GANTC 2 cut(s) 28, 320
HphI GGTGA 2 cut(s) 39, 195
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 78, 105, 422
Hpy99I CGWCG 2 cut(s) 70, 73
HpyCH4III ACNGT 2 cut(s) 19, 334
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 241, 258, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 169, 258, 341, 464
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 4 cut(s) 75, 248, 423, 435
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 19, 229
MboII GAAGA 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 3 cut(s) 306, 417, 428
MluNI TGGCCA 1 cut(s) 472
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 6 cut(s) 42, 145, 163, 211, 349, 360
Mox20I TGGCCA 1 cut(s) 472
Mph1103I ATGCAT 1 cut(s) 243
MscI TGGCCA 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 478
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 4 cut(s) 169, 258, 341, 464
NlaIV GGNNCC 2 cut(s) 274, 458
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 243
PfeI GAWTC 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 274, 458
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SatI GCNGC 1 cut(s) 267
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 165
SetI ASST 9 cut(s) 52, 71, 156, 203, 208, 264, 451, 483, 507
SfaNI GCATC 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 306, 417, 428
SsiI CCGC 3 cut(s) 38, 62, 269
SspI AATATT 2 cut(s) 286, 328
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 19, 334
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 104, 365
TasI AATT 3 cut(s) 306, 417, 428
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 70
ZraI GACGTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.