Rroxscaffold_6G00414410

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000290
Physical Location & Seq
Reverse (-)
36711901 .. 36715738
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414410.1

Sequence Viewer

Length: 327 bp
ATGGAATTGGTTCGCGAAGCGGTTGGAAGTCACGTGGCTTGGCCTGAAGAGTTTGTTATTCGAAGACAACCGTTGAAGAAAAAGAAAAGGAAGATGGATTTCGTCAAATCATTGTTCGATAAAGTTGAGCTAAATCCGTTTGTGCCCAAGAGCTGTAAGTTATTATACAAACATACCACAACAATCATGAAACAAACTAGTGAGGCAATAACCATAGTGTTGGATGACAATGTCTTTGGCATACACAAAGAATTCTTCATCTTGACTGAGAATGTGATCGATCTCTTGGAAATGCAGAAGATTGGCCAAGGAGTGATAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

9.07

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AciI CCGC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 66
AcvI CACGTG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 76
AhlI ACTAGT 1 cut(s) 197
AluBI AGCT 2 cut(s) 130, 153
AluI AGCT 2 cut(s) 130, 153
AoxI GGCC 2 cut(s) 41, 304
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp700I GAANNNNTTC 1 cut(s) 9
AsuII TTCGAA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 306
BbrPI CACGTG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 70
BccI CCATC 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 43, 306
BshVI ATCGAT 1 cut(s) 279
BsnI GGCC 2 cut(s) 43, 306
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 276, 280
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 1 cut(s) 20
BspANI GGCC 2 cut(s) 43, 306
BspCNI CTCAG 1 cut(s) 259
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 2 cut(s) 276, 280
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 2 cut(s) 279, 283
BstMBI GATC 2 cut(s) 276, 280
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 220
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 2 cut(s) 43, 306
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 1 cut(s) 229
BtuMI TCGCGA 1 cut(s) 15
CciI TCATGA 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 279
CviAII CATG 1 cut(s) 187
CviJI RGCY 5 cut(s) 38, 43, 130, 153, 306
CviKI_1 RGCY 5 cut(s) 38, 43, 130, 153, 306
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 278, 282
DpnII GATC 2 cut(s) 276, 280
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 66
Eco72I CACGTG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 166, 174, 188, 215, 242, 325
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 2 cut(s) 43, 306
Hin1II CATG 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 14, 187, 262
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 2 cut(s) 276, 280
LpnPI CCDG 1 cut(s) 57
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 278, 282
MboI GATC 2 cut(s) 276, 280
MboII GAAGA 6 cut(s) 59, 75, 88, 103, 247, 310
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 2 cut(s) 5, 251
MluNI TGGCCA 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 4, 201
MnlI CCTC 1 cut(s) 196
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 306
MvnI CGCG 1 cut(s) 15
NdeII GATC 2 cut(s) 276, 280
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 29
NruI TCGCGA 1 cut(s) 15
NspV TTCGAA 1 cut(s) 61
PagI TCATGA 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 9
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 34
PspCI CACGTG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 230
RruI TCGCGA 1 cut(s) 15
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 276, 280
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 36, 132, 155
SfuI TTCGAA 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 2 cut(s) 5, 251
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 61, 117, 279
TasI AATT 2 cut(s) 5, 251
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 203, 247
TspGWI ACGGA 1 cut(s) 126
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.