Rh5DG320000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000290
Physical Location & Seq
Reverse (-)
41219662 .. 41229610
9949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG320000.1

Sequence Viewer

Length: 996 bp
ATGTGTGAAGCTGCCTTCAATGAAGGTGATTATGATAAGGAGTCGTATGAGTTCAGTAGTTCAGTTGGTGTTCCTAAGGGTCCATCTAAGCTCTCTGGCCCACTTTCGGGTGCGAAGCTGAAGTCAGTAGATGAAGAAGTCAGAGACCAGGCACATCTTCATGTGTTGTTCAATAATGCTGAGGCGGATCCATATAGAAACGCACATAAGGAGATTGTGGAGCAGCTTTGGGGAGGGAAGAAGAAGAGCAAAAAGTGGCTACAAAGTGAGCACAATCGTACCTTTGCCGATTGGTTTCAATCCAAGGTAGCAATGGGTTCCAAGAAGGGAATTCGAAAGTCACCAAGAGGCAAAAAATTGAAGAGAAAAGCTGATCTAGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGAAGAATCTGTATCAGCCGACACTATCACGAGCACCGAATCAGTCAAAACCAGAGGGAAGCGTAATGTGGTAGCACTGTACAAGGTCTTGGTCAAGAAAGCTATGGGAAAAAAGTTTAAAGTATCATACACCGAGACTGGCAATCCAAATGGAAGAATAAGACACACTCTACAGTCTTACATAGGAATGTTGGCGCGGACCAAGGTGCCCATCAATATTGTAAGCTGGCCCGAAGTGGATGGTGACTTGAAGGATAAACTTTGGCTCGATGTTCAGAGAAAGACGTTGCCCGAAGGAGAGGTCATTGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGAAAAGATGGGGACATAGATGAGGAGGCTAGAGCTGTGGCCACAAAGATACAACGTTTTGAATTGTTTTGGGTCCGGGCTCACGACTACGTCGGGCTTTGCTTGGATGATGAAGTTGCAGCGCAAGCAAAAATCGAAGCCGACCTCAAGCTTTTCTCCTTTTTGTTTGTCGCCGGTTTGGGATCTGAGTCGTGCTTCTGGGTGTTGGCAAAGGCCAGAGGCAGTACTATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

331

Amino Acids

37.33

Weight (kDa)

9.19

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccII CGCG 1 cut(s) 616
AciI CCGC 2 cut(s) 185, 616
AclI AACGTT 1 cut(s) 814
AclWI GGATC 3 cut(s) 182, 195, 949
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 3 cut(s) 280, 500, 985
AfiI CCNNNNNNNGG 2 cut(s) 106, 107
AgsI TTSAA 7 cut(s) 19, 172, 299, 361, 413, 670, 821
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 9 cut(s) 11, 91, 118, 226, 371, 521, 645, 794, 910
AluI AGCT 9 cut(s) 11, 91, 118, 226, 371, 521, 645, 794, 910
Alw21I GWGCWC 2 cut(s) 273, 455
Alw26I GTCTC 4 cut(s) 138, 374, 389, 548
AlwI GGATC 3 cut(s) 182, 195, 949
AoxI GGCC 4 cut(s) 97, 647, 798, 972
ApeKI GCWGC 3 cut(s) 11, 223, 878
ApoI RAATTY 1 cut(s) 330
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 705, 737
AspLEI GCGC 2 cut(s) 616, 883
AspS9I GGNCC 5 cut(s) 80, 98, 618, 648, 832
AsuC2I CCSGG 1 cut(s) 836
AsuHPI GGTGA 3 cut(s) 38, 333, 674
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 3 cut(s) 80, 618, 832
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 630
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BalI TGGCCA 1 cut(s) 800
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 841
BauI CACGAG 1 cut(s) 448
Bbv12I GWGCWC 2 cut(s) 273, 455
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 235, 890
BccI CCATC 4 cut(s) 91, 638, 653, 761
BciT130I CCWGG 1 cut(s) 149
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 4 cut(s) 138, 374, 389, 548
BfaI CTAG 2 cut(s) 377, 789
BfmI CTRYAG 1 cut(s) 590
BisI GCNGC 3 cut(s) 12, 224, 879
BlsI GCNGC 3 cut(s) 13, 225, 880
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 2 cut(s) 149, 836
Bme18I GGWCC 3 cut(s) 80, 618, 832
BmgT120I GGNCC 5 cut(s) 80, 98, 618, 648, 832
BmiI GGNNCC 5 cut(s) 81, 189, 319, 627, 833
BmrFI CCNGG 2 cut(s) 149, 836
Bpu10I CCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 303, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 107
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 303, 621
BseGI GGATG 2 cut(s) 664, 871
BseLI CCNNNNNNNGG 2 cut(s) 106, 107
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 171, 384, 936
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 797
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 2 cut(s) 235, 890
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 4 cut(s) 99, 649, 800, 974
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 273, 455
BsiSI CCGG 2 cut(s) 835, 933
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 2 cut(s) 106, 107
BsmAI GTCTC 4 cut(s) 138, 374, 389, 548
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 4 cut(s) 99, 649, 800, 974
Bso31I GGTCTC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 273, 455, 630, 841
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 4 cut(s) 187, 373, 727, 941
BspACI CCGC 2 cut(s) 185, 616
BspANI GGCC 4 cut(s) 99, 649, 800, 974
BspCNI CTCAG 3 cut(s) 172, 385, 937
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 5 cut(s) 81, 189, 319, 627, 833
BspPI GGATC 3 cut(s) 182, 195, 949
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 932
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 2 cut(s) 303, 621
BssMI GATC 4 cut(s) 187, 373, 727, 941
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 2 cut(s) 303, 621
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 498, 594
Bst6I CTCTTC 2 cut(s) 239, 356
BstAUI TGTACA 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 647, 885
BstDEI CTNAG 5 cut(s) 75, 87, 180, 393, 945
BstF5I GGATG 2 cut(s) 664, 871
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 616, 883
BstKTI GATC 4 cut(s) 190, 376, 730, 944
BstMAI GTCTC 4 cut(s) 138, 374, 389, 548
BstMBI GATC 4 cut(s) 187, 373, 727, 941
BstMWI GCNNNNNNNGC 1 cut(s) 884
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 147, 834
BstSFI CTRYAG 1 cut(s) 590
BstSLI GKGCMC 1 cut(s) 630
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 2 cut(s) 235, 890
BstX2I RGATCY 2 cut(s) 187, 941
BstYI RGATCY 2 cut(s) 187, 941
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 4 cut(s) 99, 649, 800, 974
BtsCI GGATG 2 cut(s) 664, 871
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 647, 885
CfoI GCGC 2 cut(s) 616, 883
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 5 cut(s) 80, 98, 618, 648, 832
Csp6I GTAC 3 cut(s) 279, 499, 984
CviAII CATG 1 cut(s) 161
CviQI GTAC 3 cut(s) 279, 499, 984
DdeI CTNAG 5 cut(s) 75, 87, 180, 393, 945
DpnI GATC 4 cut(s) 189, 375, 729, 943
DpnII GATC 4 cut(s) 187, 373, 727, 941
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 798
Eam1104I CTCTTC 2 cut(s) 239, 356
EarI CTCTTC 2 cut(s) 239, 356
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 303, 621
Eco24I GRGCYC 1 cut(s) 841
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 3 cut(s) 80, 618, 832
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 303, 621
EcoT38I GRGCYC 1 cut(s) 841
ErhI CCWWGG 2 cut(s) 303, 621
FaeI CATG 1 cut(s) 164
FaqI GGGAC 1 cut(s) 785
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 12, 224, 879
FokI GGATG 2 cut(s) 671, 878
FriOI GRGCYC 1 cut(s) 841
Fsp4HI GCNGC 3 cut(s) 12, 224, 879
FspBI CTAG 2 cut(s) 377, 789
GlaI GCGC 2 cut(s) 615, 882
GluI GCNGC 3 cut(s) 12, 224, 879
HaeIII GGCC 4 cut(s) 99, 649, 800, 974
HapII CCGG 2 cut(s) 835, 933
HhaI GCGC 2 cut(s) 616, 883
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 2 cut(s) 614, 881
HinP1I GCGC 2 cut(s) 614, 881
HincII GTYRAC 1 cut(s) 758
HindII GTYRAC 1 cut(s) 758
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 4 cut(s) 41, 425, 458, 947
HpaII CCGG 2 cut(s) 835, 933
HphI GGTGA 3 cut(s) 38, 333, 674
Hpy166II GTNNAC 1 cut(s) 758
Hpy188I TCNGA 3 cut(s) 143, 696, 946
Hpy188III TCNNGA 4 cut(s) 377, 448, 514, 842
Hpy8I GTNNAC 1 cut(s) 758
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 5 cut(s) 17, 25, 319, 664, 707
HpyCH4III ACNGT 2 cut(s) 498, 594
HpyCH4IV ACGT 3 cut(s) 704, 814, 849
HpyCH4V TGCA 2 cut(s) 734, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 884
HpyF3I CTNAG 5 cut(s) 75, 87, 180, 393, 945
HpySE526I ACGT 3 cut(s) 704, 814, 849
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 2 cut(s) 614, 881
Kzo9I GATC 4 cut(s) 187, 373, 727, 941
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 2 cut(s) 235, 890
MaeI CTAG 2 cut(s) 377, 789
MaeII ACGT 3 cut(s) 704, 814, 849
MaeIII GTNAC 2 cut(s) 339, 662
MalI GATC 4 cut(s) 189, 375, 729, 943
MboI GATC 4 cut(s) 187, 373, 727, 941
MflI RGATCY 2 cut(s) 187, 941
MhlI GDGCHC 4 cut(s) 273, 455, 630, 841
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 4 cut(s) 330, 356, 735, 821
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 2 cut(s) 50, 956
MnlI CCTC 9 cut(s) 175, 227, 341, 467, 712, 775, 778, 914, 971
Mox20I TGGCCA 1 cut(s) 800
MscI TGGCCA 1 cut(s) 800
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 159, 605
Msp20I TGGCCA 1 cut(s) 800
MspI CCGG 2 cut(s) 835, 933
MspR9I CCNGG 2 cut(s) 149, 836
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 884
NciI CCSGG 1 cut(s) 836
NdeII GATC 4 cut(s) 187, 373, 727, 941
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 5 cut(s) 81, 189, 319, 627, 833
NmuCI GTSAC 2 cut(s) 339, 662
NspV TTCGAA 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 425, 458
PflFI GACNNNGTC 1 cut(s) 848
PkrI GCNGC 3 cut(s) 13, 225, 880
PleI GAGTC 2 cut(s) 49, 955
PpsI GAGTC 2 cut(s) 49, 955
Psp1406I AACGTT 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 5 cut(s) 81, 189, 319, 627, 833
PspPI GGNCC 5 cut(s) 80, 98, 618, 648, 832
PsuI RGATCY 2 cut(s) 187, 941
PsyI GACNNNGTC 1 cut(s) 848
RsaI GTAC 3 cut(s) 280, 500, 985
RsaNI GTAC 3 cut(s) 279, 499, 984
RseI CAYNNNNRTG 2 cut(s) 159, 605
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 12, 224, 879
Sau3AI GATC 4 cut(s) 187, 373, 727, 941
Sau96I GGNCC 5 cut(s) 80, 98, 618, 648, 832
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 2 cut(s) 50, 956
ScrFI CCNGG 2 cut(s) 149, 836
SduI GDGCHC 4 cut(s) 273, 455, 630, 841
SfcI CTRYAG 1 cut(s) 590
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 3 cut(s) 80, 618, 832
SmiMI CAYNNNNRTG 2 cut(s) 159, 605
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
Sse9I AATT 4 cut(s) 330, 356, 735, 821
SsiI CCGC 2 cut(s) 185, 616
SspI AATATT 1 cut(s) 637
SspMI CTAG 2 cut(s) 377, 789
StyD4I CCNGG 2 cut(s) 147, 834
StyI CCWWGG 2 cut(s) 303, 621
TaaI ACNGT 2 cut(s) 498, 594
TaiI ACGT 3 cut(s) 707, 817, 852
TaqI TCGA 3 cut(s) 334, 687, 894
TasI AATT 4 cut(s) 330, 356, 735, 821
TatI WGTACW 2 cut(s) 498, 983
TfiI GAWTC 2 cut(s) 425, 458
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 2 cut(s) 339, 662
TseI GCWGC 3 cut(s) 11, 223, 878
Tsp45I GTSAC 2 cut(s) 339, 662
TspDTI ATGAA 5 cut(s) 36, 147, 149, 417, 885
TspRI CASTG 1 cut(s) 501
Tth111I GACNNNGTC 1 cut(s) 848
VpaK11BI GGWCC 3 cut(s) 80, 618, 832
XapI RAATTY 1 cut(s) 330
XbaI TCTAGA 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 2 cut(s) 377, 789
ZrmI AGTACT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.