Rh3DG204700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000290
Physical Location & Seq
Forward (+)
18694016 .. 18711501
17486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG204700.1

Sequence Viewer

Length: 465 bp
ATGGTACACACGTGGTTCCCGCGTACCAACTCTCGAGAGATCGCTCTGCGCTCCAAGATCGCTCTGTCACCGCCTCTCTCTCTTTCTCTCTGGGCTGCCGTCAACATATCTTCCAAGATCGATCTGTGCTCCAACATCTTCATAGATCGATCTGTTCTCCAACATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATCTGTGCTCCAAGCTCTTCAAAGCTATTCTGGGTACTAAATTTCCGCAGGCAGAGACAGGATGGGAAAGACGAAATCCACCGGTATTGAAAATGAGGGATCTGGAAAACCAAAAGCCACATGGCCTGATGAGTAAGGCTACAAATGTAGGATGCAATGCTGTCCGGCTAACTCGCTTCTGCCTTCTGGTACAAGACTACAAGTGCTTCTTAAAGAGACGCAAACCAATGACAGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.67

Weight (kDa)

10.22

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AciI CCGC 3 cut(s) 20, 71, 269
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 263
AcvI CACGTG 1 cut(s) 12
AfaI GTAC 5 cut(s) 6, 25, 205, 259, 414
AflIII ACRYGT 1 cut(s) 9
AgeI ACCGGT 1 cut(s) 304
AgsI TTSAA 4 cut(s) 170, 198, 244, 313
AluBI AGCT 2 cut(s) 238, 248
AluI AGCT 2 cut(s) 238, 248
Alw21I GWGCWC 3 cut(s) 131, 187, 233
Alw26I GTCTC 2 cut(s) 272, 433
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 304
AspLEI GCGC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 33
BaeI ACNNNNGTAYC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 131, 187, 233
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 272, 433
BfaI CTAG 1 cut(s) 463
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 365
BoxI GACNNNNGTC 1 cut(s) 458
Bsa29I ATCGAT 4 cut(s) 120, 148, 176, 222
BsaAI YACGTR 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 385
BseCI ATCGAT 4 cut(s) 120, 148, 176, 222
BseGI GGATG 2 cut(s) 290, 380
BseMI GCAATG 1 cut(s) 385
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 348
BshTI ACCGGT 1 cut(s) 304
BshVI ATCGAT 4 cut(s) 120, 148, 176, 222
BsiHKAI GWGCWC 3 cut(s) 131, 187, 233
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 305, 388
BsmAI GTCTC 2 cut(s) 272, 433
BsmBI CGTCTC 1 cut(s) 433
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 131, 187, 233
BspACI CCGC 3 cut(s) 20, 71, 269
BspANI GGCC 1 cut(s) 348
BspDI ATCGAT 4 cut(s) 120, 148, 176, 222
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 2 cut(s) 290, 380
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 51
BstMAI GTCTC 2 cut(s) 272, 433
BstPAI GACNNNNGTC 1 cut(s) 458
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu15I ATCGAT 4 cut(s) 120, 148, 176, 222
BsuRI GGCC 1 cut(s) 348
BsuTUI ATCGAT 4 cut(s) 120, 148, 176, 222
BtsCI GGATG 2 cut(s) 290, 380
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 304
ClaI ATCGAT 4 cut(s) 120, 148, 176, 222
CseI GACGC 1 cut(s) 450
Csp6I GTAC 5 cut(s) 5, 24, 204, 258, 413
CspAI ACCGGT 1 cut(s) 304
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 1 cut(s) 344
CviJI RGCY 7 cut(s) 95, 238, 248, 340, 348, 362, 391
CviKI_1 RGCY 7 cut(s) 95, 238, 248, 340, 348, 362, 391
CviQI GTAC 5 cut(s) 5, 24, 204, 258, 413
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 1 cut(s) 347
FaiI YATR 3 cut(s) 107, 143, 345
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 1 cut(s) 343
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 297, 387
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 463
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 305, 388
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HpaII CCGG 2 cut(s) 305, 388
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 7, 103
Hpy188III TCNNGA 4 cut(s) 33, 35, 215, 326
Hpy8I GTNNAC 2 cut(s) 7, 103
HpyAV CCTTC 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 4 cut(s) 56, 134, 190, 236
LpnPI CCDG 9 cut(s) 76, 239, 257, 267, 311, 318, 362, 395, 401
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 463
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 5 cut(s) 102, 130, 158, 186, 232
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 3 cut(s) 131, 187, 233
MluCI AATT 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 156, 184
MnlI CCTC 2 cut(s) 84, 312
MseI TTAA 1 cut(s) 434
MspI CCGG 2 cut(s) 305, 388
MvnI CGCG 1 cut(s) 22
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 304
PkrI GCNGC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 458
PspCI CACGTG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 5 cut(s) 6, 25, 205, 259, 414
RsaNI GTAC 5 cut(s) 5, 24, 204, 258, 413
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 1 cut(s) 96
SduI GDGCHC 3 cut(s) 131, 187, 233
SetI ASST 3 cut(s) 14, 240, 250
SfaNI GCATC 1 cut(s) 365
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 263
SsiI CCGC 3 cut(s) 20, 71, 269
SspMI CTAG 1 cut(s) 463
TaiI ACGT 1 cut(s) 14
TaqI TCGA 6 cut(s) 34, 120, 148, 176, 214, 222
TasI AATT 1 cut(s) 263
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 130
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 33
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.