Rh6CG065500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000290
Physical Location & Seq
Forward (+)
6481541 .. 6492922
11382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG065500.1

Sequence Viewer

Length: 555 bp
ATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGACGTGGACGGTGACTTGAAGGATAAACTTTGGCTCGATGTTAAGGATACATTCAAGGTCGCCCCTGAAAGTAAGAAACTGGTATTGATATCTGCTGGCACTAAATGGAGAGCATTCAAGACCATGTTAACAAGAAAATATGTGCTCCCATACTTGGGAAAGAAGAAGAAGTTGAGAAAGCCACCAAGTGAATATGCATTTGTTGGGAGGCAACCATGGAGGCAATTTGTGAAAGAGAGGACTACCGAGAAATGGCTGAAAAAGACTTTGCCTGAAGGAGAGATAATAGATCGTGCAATTATGTGGAAGAAAGCCCGTGAACGTAAAGATGGGGACATAGATGAAGAGGCTAGAGCTGTGGTGACAAAGATAAGTTCAGGGCCAAGCAAAGGTGGTGGAGGACACAGAAGAAGGGCTGCTCGGGTTCTGCTGGTACAAAAAGGAATCAAAGACAACTCTGGCCCGAGTCCTGGAGTTGGTCACCAGTATGGCAATGGCATACACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

184

Amino Acids

20.91

Weight (kDa)

10.34

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 6 cut(s) 199, 200, 297, 434, 515, 521
AgsI TTSAA 3 cut(s) 64, 100, 163
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 2 cut(s) 39, 401
AluI AGCT 2 cut(s) 39, 401
Alw21I GWGCWC 1 cut(s) 192
Ama87I CYCGRG 2 cut(s) 465, 508
AoxI GGCC 3 cut(s) 41, 425, 505
ApeKI GCWGC 1 cut(s) 461
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 3 cut(s) 42, 425, 506
AsuHPI GGTGA 3 cut(s) 68, 418, 518
AvaI CYCGRG 2 cut(s) 465, 508
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 32, 368
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 516
BmeT110I CYCGRG 2 cut(s) 465, 508
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 42, 425, 506
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 6 cut(s) 199, 200, 297, 434, 515, 521
Bse1I ACTGG 2 cut(s) 129, 529
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 260
BseLI CCNNNNNNNGG 6 cut(s) 199, 200, 297, 434, 515, 521
BseMI GCAATG 1 cut(s) 544
BseNI ACTGG 2 cut(s) 129, 529
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 3 cut(s) 43, 427, 507
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 2 cut(s) 465, 508
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 6 cut(s) 199, 200, 297, 434, 515, 521
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 3 cut(s) 43, 427, 507
BsoBI CYCGRG 2 cut(s) 465, 508
Bsp1286I GDGCHC 2 cut(s) 24, 192
Bsp143I GATC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 10
BspANI GGCC 3 cut(s) 43, 427, 507
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 2 cut(s) 129, 529
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 56, 551
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 41, 142
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 524
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 516
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 24
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 448
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 3 cut(s) 43, 427, 507
BtgI CCRYGG 1 cut(s) 260
BtrI CACGTC 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 41, 142
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 42, 425, 506
Csp6I GTAC 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 2 cut(s) 169, 261
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 260
Eco32I GATATC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 465, 508
Eco91I GGTNACC 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 514
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 172, 264
FaiI YATR 9 cut(s) 170, 186, 196, 240, 262, 347, 383, 534, 545
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 168, 260
Fnu4HI GCNGC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 3 cut(s) 43, 427, 507
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 172, 264
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 2 cut(s) 489, 511
HpaI GTTAAC 1 cut(s) 174
HphI GGTGA 3 cut(s) 68, 418, 518
Hpy166II GTNNAC 3 cut(s) 52, 174, 365
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 3 cut(s) 52, 174, 365
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 58, 314, 450
HpyCH4III ACNGT 2 cut(s) 56, 551
HpyCH4IV ACGT 2 cut(s) 48, 367
HpyCH4V TGCA 2 cut(s) 242, 341
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 48, 367
Hsp92II CATG 2 cut(s) 172, 264
HspAI GCGC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 48, 367
MaeIII GTNAC 3 cut(s) 56, 406, 524
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 5 cut(s) 220, 223, 364, 401, 465
MhlI GDGCHC 2 cut(s) 24, 192
MluCI AATT 2 cut(s) 269, 342
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 5 cut(s) 246, 258, 276, 385, 437
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 2 cut(s) 87, 173
MslI CAYNNNNRTG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 260
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 172, 264
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 3 cut(s) 56, 406, 524
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 3 cut(s) 42, 425, 506
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 2 cut(s) 87, 173
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 3 cut(s) 42, 425, 506
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 24, 192
SetI ASST 7 cut(s) 21, 41, 51, 105, 370, 403, 439
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 2 cut(s) 269, 342
SsiI CCGC 1 cut(s) 10
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 56, 551
TaiI ACGT 2 cut(s) 51, 370
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 269, 342
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 2 cut(s) 87, 173
Tru9I TTAA 2 cut(s) 87, 173
TseFI GTSAC 3 cut(s) 56, 406, 524
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 56, 406, 524
TspDTI ATGAA 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.