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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 666 |
| AccB1I | GGYRCC | 1 cut(s) | 598 |
| AccI | GTMKAC | 1 cut(s) | 630 |
| AccII | CGCG | 2 cut(s) | 587, 589 |
| AciI | CCGC | 1 cut(s) | 589 |
| AclI | AACGTT | 1 cut(s) | 28 |
| AclWI | GGATC | 3 cut(s) | 63, 158, 171 |
| AcsI | RAATTY | 3 cut(s) | 506, 651, 1104 |
| AcvI | CACGTG | 1 cut(s) | 1176 |
| AcyI | GRCGYC | 1 cut(s) | 663 |
| AfaI | GTAC | 3 cut(s) | 256, 552, 1014 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 531, 779 |
| AflII | CTTAAG | 1 cut(s) | 95 |
| AflIII | ACRYGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 5 cut(s) | 26, 275, 643, 679, 742 |
| AjnI | CCWGG | 1 cut(s) | 666 |
| AluBI | AGCT | 5 cut(s) | 67, 494, 618, 1030, 1099 |
| AluI | AGCT | 5 cut(s) | 67, 494, 618, 1030, 1099 |
| Alw21I | GWGCWC | 1 cut(s) | 249 |
| Alw26I | GTCTC | 3 cut(s) | 350, 407, 727 |
| AlwI | GGATC | 3 cut(s) | 63, 158, 171 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 401 |
| AoxI | GGCC | 4 cut(s) | 73, 620, 684, 1005 |
| ApeKI | GCWGC | 1 cut(s) | 769 |
| ApoI | RAATTY | 3 cut(s) | 506, 651, 1104 |
| AspLEI | GCGC | 1 cut(s) | 589 |
| AspS9I | GGNCC | 4 cut(s) | 74, 621, 685, 1006 |
| AsuHPI | GGTGA | 2 cut(s) | 647, 1106 |
| AsuII | TTCGAA | 1 cut(s) | 299 |
| AxyI | CCTNAGG | 1 cut(s) | 51 |
| BaeGI | GKGCMC | 1 cut(s) | 603 |
| BamHI | GGATCC | 1 cut(s) | 163 |
| BanI | GGYRCC | 1 cut(s) | 598 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 908, 940 |
| BbrPI | CACGTG | 1 cut(s) | 1176 |
| Bbv12I | GWGCWC | 1 cut(s) | 249 |
| BbvI | GCAGC | 1 cut(s) | 756 |
| BccI | CCATC | 3 cut(s) | 425, 936, 1069 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 279, 313 |
| BciT130I | CCWGG | 1 cut(s) | 668 |
| BciVI | GTATCC | 1 cut(s) | 664 |
| BclI | TGATCA | 1 cut(s) | 483 |
| BcoDI | GTCTC | 3 cut(s) | 350, 407, 727 |
| BfaI | CTAG | 3 cut(s) | 962, 1100, 1139 |
| BfmI | CTRYAG | 2 cut(s) | 408, 867 |
| BfrI | CTTAAG | 1 cut(s) | 95 |
| BfuI | GTATCC | 1 cut(s) | 664 |
| BisI | GCNGC | 1 cut(s) | 770 |
| BlsI | GCNGC | 1 cut(s) | 771 |
| Bme1390I | CCNGG | 1 cut(s) | 668 |
| BmgT120I | GGNCC | 4 cut(s) | 74, 621, 685, 1006 |
| BmiI | GGNNCC | 4 cut(s) | 165, 236, 600, 687 |
| BmrFI | CCNGG | 1 cut(s) | 668 |
| BmsI | GCATC | 1 cut(s) | 570 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| Bpu14I | TTCGAA | 1 cut(s) | 299 |
| BpuEI | CTTGAG | 1 cut(s) | 1116 |
| BsaAI | YACGTR | 1 cut(s) | 1176 |
| BsaHI | GRCGYC | 1 cut(s) | 663 |
| BsaI | GGTCTC | 1 cut(s) | 407 |
| BsaJI | CCNNGG | 2 cut(s) | 826, 839 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 219, 249 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 531, 779 |
| Bse1I | ACTGG | 1 cut(s) | 1174 |
| Bse21I | CCTNAGG | 1 cut(s) | 51 |
| Bse3DI | GCAATG | 1 cut(s) | 297 |
| BseBI | CCWGG | 1 cut(s) | 668 |
| BseDI | CCNNGG | 2 cut(s) | 826, 839 |
| BseGI | GGATG | 1 cut(s) | 585 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 531, 779 |
| BseMI | GCAATG | 1 cut(s) | 297 |
| BseMII | CTCAG | 1 cut(s) | 357 |
| BseNI | ACTGG | 1 cut(s) | 1174 |
| BseRI | GAGGAG | 2 cut(s) | 235, 980 |
| BseSI | GKGCMC | 1 cut(s) | 603 |
| BseXI | GCAGC | 1 cut(s) | 756 |
| BseYI | CCCAGC | 1 cut(s) | 209 |
| Bsh1236I | CGCG | 2 cut(s) | 587, 589 |
| BshFI | GGCC | 4 cut(s) | 75, 622, 686, 1007 |
| BshNI | GGYRCC | 1 cut(s) | 598 |
| BsiHKAI | GWGCWC | 1 cut(s) | 249 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 531, 779 |
| BsmAI | GTCTC | 3 cut(s) | 350, 407, 727 |
| BsmI | GAATGC | 1 cut(s) | 821 |
| BsnI | GGCC | 4 cut(s) | 75, 622, 686, 1007 |
| Bso31I | GGTCTC | 1 cut(s) | 407 |
| Bsp119I | TTCGAA | 1 cut(s) | 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 249, 603 |
| Bsp143I | GATC | 4 cut(s) | 55, 121, 163, 483 |
| Bsp19I | CCATGG | 1 cut(s) | 839 |
| BspACI | CCGC | 1 cut(s) | 589 |
| BspANI | GGCC | 4 cut(s) | 75, 622, 686, 1007 |
| BspCNI | CTCAG | 1 cut(s) | 358 |
| BspFNI | CGCG | 2 cut(s) | 587, 589 |
| BspLI | GGNNCC | 4 cut(s) | 165, 236, 600, 687 |
| BspMAI | CTGCAG | 1 cut(s) | 412 |
| BspPI | GGATC | 3 cut(s) | 63, 158, 171 |
| BspT104I | TTCGAA | 1 cut(s) | 299 |
| BspT107I | GGYRCC | 1 cut(s) | 598 |
| BspTI | CTTAAG | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 407 |
| BsrDI | GCAATG | 1 cut(s) | 297 |
| BsrI | ACTGG | 1 cut(s) | 1174 |
| BssECI | CCNNGG | 2 cut(s) | 826, 839 |
| BssMI | GATC | 4 cut(s) | 55, 121, 163, 483 |
| BssNI | GRCGYC | 1 cut(s) | 663 |
| BssT1I | CCWWGG | 2 cut(s) | 826, 839 |
| Bst2UI | CCWGG | 1 cut(s) | 668 |
| Bst4CI | ACNGT | 3 cut(s) | 204, 635, 986 |
| Bst6I | CTCTTC | 3 cut(s) | 212, 439, 911 |
| BstACI | GRCGYC | 1 cut(s) | 663 |
| BstAFI | CTTAAG | 1 cut(s) | 95 |
| BstBAI | YACGTR | 1 cut(s) | 1176 |
| BstBI | TTCGAA | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 3 cut(s) | 585, 620, 721 |
| BstDEI | CTNAG | 5 cut(s) | 51, 239, 366, 778, 1031 |
| BstDSI | CCRYGG | 1 cut(s) | 839 |
| BstF5I | GGATG | 1 cut(s) | 585 |
| BstFNI | CGCG | 2 cut(s) | 587, 589 |
| BstHHI | GCGC | 1 cut(s) | 589 |
| BstKTI | GATC | 4 cut(s) | 58, 124, 166, 486 |
| BstMAI | GTCTC | 3 cut(s) | 350, 407, 727 |
| BstMBI | GATC | 4 cut(s) | 55, 121, 163, 483 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 811 |
| BstNI | CCWGG | 1 cut(s) | 668 |
| BstNSI | RCATGY | 1 cut(s) | 134 |
| BstSCI | CCNGG | 1 cut(s) | 666 |
| BstSFI | CTRYAG | 2 cut(s) | 408, 867 |
| BstSLI | GKGCMC | 1 cut(s) | 603 |
| BstUI | CGCG | 2 cut(s) | 587, 589 |
| BstV1I | GCAGC | 1 cut(s) | 756 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| Bsu36I | CCTNAGG | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 664 |
| BsuRI | GGCC | 4 cut(s) | 75, 622, 686, 1007 |
| BtgI | CCRYGG | 1 cut(s) | 839 |
| BtsCI | GGATG | 1 cut(s) | 585 |
| Cac8I | GCNNGC | 3 cut(s) | 585, 620, 721 |
| CaiI | CAGNNNCTG | 1 cut(s) | 401 |
| CfoI | GCGC | 1 cut(s) | 589 |
| Cfr13I | GGNCC | 4 cut(s) | 74, 621, 685, 1006 |
| Csp6I | GTAC | 3 cut(s) | 255, 551, 1013 |
| CviAII | CATG | 4 cut(s) | 131, 137, 840, 876 |
| CviQI | GTAC | 3 cut(s) | 255, 551, 1013 |
| DdeI | CTNAG | 5 cut(s) | 51, 239, 366, 778, 1031 |
| DpnI | GATC | 4 cut(s) | 57, 123, 165, 485 |
| DpnII | GATC | 4 cut(s) | 55, 121, 163, 483 |
| DraI | TTTAAA | 1 cut(s) | 511 |
| Eam1104I | CTCTTC | 3 cut(s) | 212, 439, 911 |
| EarI | CTCTTC | 3 cut(s) | 212, 439, 911 |
| Eco130I | CCWWGG | 2 cut(s) | 826, 839 |
| Eco31I | GGTCTC | 1 cut(s) | 407 |
| Eco72I | CACGTG | 1 cut(s) | 1176 |
| Eco81I | CCTNAGG | 1 cut(s) | 51 |
| EcoRII | CCWGG | 1 cut(s) | 666 |
| EcoT14I | CCWWGG | 2 cut(s) | 826, 839 |
| EcoT22I | ATGCAT | 1 cut(s) | 823 |
| ErhI | CCWWGG | 2 cut(s) | 826, 839 |
| FaeI | CATG | 4 cut(s) | 134, 140, 843, 879 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 734, 766 |
| FatI | CATG | 4 cut(s) | 130, 136, 839, 875 |
| FbaI | TGATCA | 1 cut(s) | 483 |
| FblI | GTMKAC | 1 cut(s) | 630 |
| Fnu4HI | GCNGC | 1 cut(s) | 770 |
| FokI | GGATG | 1 cut(s) | 592 |
| Fsp4HI | GCNGC | 1 cut(s) | 770 |
| FspBI | CTAG | 3 cut(s) | 962, 1100, 1139 |
| GlaI | GCGC | 1 cut(s) | 588 |
| GluI | GCNGC | 1 cut(s) | 770 |
| GsaI | CCCAGC | 1 cut(s) | 213 |
| HaeIII | GGCC | 4 cut(s) | 75, 622, 686, 1007 |
| HhaI | GCGC | 1 cut(s) | 589 |
| Hin1I | GRCGYC | 1 cut(s) | 663 |
| Hin1II | CATG | 4 cut(s) | 134, 140, 843, 879 |
| Hin6I | GCGC | 1 cut(s) | 587 |
| HinP1I | GCGC | 1 cut(s) | 587 |
| HincII | GTYRAC | 1 cut(s) | 711 |
| HindII | GTYRAC | 1 cut(s) | 711 |
| HindIII | AAGCTT | 1 cut(s) | 492 |
| HinfI | GANTC | 5 cut(s) | 398, 404, 431, 535, 909 |
| HphI | GGTGA | 2 cut(s) | 647, 1106 |
| Hpy166II | GTNNAC | 5 cut(s) | 227, 631, 711, 905, 1013 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 367, 403, 861 |
| Hpy188III | TCNNGA | 5 cut(s) | 487, 742, 913, 942, 1148 |
| Hpy8I | GTNNAC | 5 cut(s) | 227, 631, 711, 905, 1013 |
| HpyAV | CCTTC | 5 cut(s) | 106, 301, 838, 997, 1084 |
| HpyCH4III | ACNGT | 3 cut(s) | 204, 635, 986 |
| HpyCH4IV | ACGT | 3 cut(s) | 28, 663, 1175 |
| HpyCH4V | TGCA | 7 cut(s) | 102, 179, 410, 565, 821, 989, 1055 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 811 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 239, 366, 778, 1031 |
| HpySE526I | ACGT | 3 cut(s) | 28, 663, 1175 |
| Hsp92I | GRCGYC | 1 cut(s) | 663 |
| Hsp92II | CATG | 4 cut(s) | 134, 140, 843, 879 |
| HspAI | GCGC | 1 cut(s) | 587 |
| Ksp22I | TGATCA | 1 cut(s) | 483 |
| Kzo9I | GATC | 4 cut(s) | 55, 121, 163, 483 |
| LmnI | GCTCC | 3 cut(s) | 17, 240, 1027 |
| Lsp1109I | GCAGC | 1 cut(s) | 756 |
| LweI | GCATC | 1 cut(s) | 570 |
| MaeI | CTAG | 3 cut(s) | 962, 1100, 1139 |
| MaeII | ACGT | 3 cut(s) | 28, 663, 1175 |
| MaeIII | GTNAC | 2 cut(s) | 514, 1042 |
| MalI | GATC | 4 cut(s) | 57, 123, 165, 485 |
| MboI | GATC | 4 cut(s) | 55, 121, 163, 483 |
| MfeI | CAATTG | 1 cut(s) | 39 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 2 cut(s) | 249, 603 |
| MlyI | GAGTC | 1 cut(s) | 918 |
| MmeI | TCCRAC | 1 cut(s) | 264 |
| MnlI | CCTC | 9 cut(s) | 151, 213, 361, 440, 855, 865, 958, 961, 1030 |
| Mph1103I | ATGCAT | 1 cut(s) | 823 |
| MseI | TTAA | 5 cut(s) | 96, 510, 606, 752, 1017 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspCI | CTTAAG | 1 cut(s) | 95 |
| MspR9I | CCNGG | 1 cut(s) | 668 |
| MunI | CAATTG | 1 cut(s) | 39 |
| Mva1269I | GAATGC | 1 cut(s) | 821 |
| MvaI | CCWGG | 1 cut(s) | 668 |
| MvnI | CGCG | 2 cut(s) | 587, 589 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 811 |
| NcoI | CCATGG | 1 cut(s) | 839 |
| NdeII | GATC | 4 cut(s) | 55, 121, 163, 483 |
| NlaIII | CATG | 4 cut(s) | 134, 140, 843, 879 |
| NlaIV | GGNNCC | 4 cut(s) | 165, 236, 600, 687 |
| NmuCI | GTSAC | 2 cut(s) | 514, 1042 |
| NsiI | ATGCAT | 1 cut(s) | 823 |
| NspI | RCATGY | 1 cut(s) | 134 |
| NspV | TTCGAA | 1 cut(s) | 299 |
| PciI | ACATGT | 1 cut(s) | 130 |
| PctI | GAATGC | 1 cut(s) | 821 |
| PfeI | GAWTC | 4 cut(s) | 398, 404, 431, 535 |
| PfoI | TCCNGGA | 1 cut(s) | 666 |
| PkrI | GCNGC | 1 cut(s) | 771 |
| PleI | GAGTC | 1 cut(s) | 917 |
| PmaCI | CACGTG | 1 cut(s) | 1176 |
| PmlI | CACGTG | 1 cut(s) | 1176 |
| PpsI | GAGTC | 1 cut(s) | 917 |
| Ppu21I | YACGTR | 1 cut(s) | 1176 |
| PscI | ACATGT | 1 cut(s) | 130 |
| Psp1406I | AACGTT | 1 cut(s) | 28 |
| Psp6I | CCWGG | 1 cut(s) | 666 |
| PspCI | CACGTG | 1 cut(s) | 1176 |
| PspFI | CCCAGC | 1 cut(s) | 209 |
| PspGI | CCWGG | 1 cut(s) | 666 |
| PspN4I | GGNNCC | 4 cut(s) | 165, 236, 600, 687 |
| PspPI | GGNCC | 4 cut(s) | 74, 621, 685, 1006 |
| PstI | CTGCAG | 1 cut(s) | 412 |
| PstNI | CAGNNNCTG | 1 cut(s) | 401 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 3 cut(s) | 256, 552, 1014 |
| RsaNI | GTAC | 3 cut(s) | 255, 551, 1013 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SaqAI | TTAA | 5 cut(s) | 96, 510, 606, 752, 1017 |
| SatI | GCNGC | 1 cut(s) | 770 |
| Sau3AI | GATC | 4 cut(s) | 55, 121, 163, 483 |
| Sau96I | GGNCC | 4 cut(s) | 74, 621, 685, 1006 |
| SchI | GAGTC | 1 cut(s) | 918 |
| ScrFI | CCNGG | 1 cut(s) | 668 |
| SduI | GDGCHC | 2 cut(s) | 249, 603 |
| SfaNI | GCATC | 1 cut(s) | 570 |
| SfcI | CTRYAG | 2 cut(s) | 408, 867 |
| SfuI | TTCGAA | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 2 cut(s) | 95, 1131 |
| SmoI | CTYRAG | 2 cut(s) | 95, 1131 |
| SsiI | CCGC | 1 cut(s) | 589 |
| SspMI | CTAG | 3 cut(s) | 962, 1100, 1139 |
| StyD4I | CCNGG | 1 cut(s) | 666 |
| StyI | CCWWGG | 2 cut(s) | 826, 839 |
| TaaI | ACNGT | 3 cut(s) | 204, 635, 986 |
| TaiI | ACGT | 3 cut(s) | 31, 666, 1178 |
| TaqI | TCGA | 1 cut(s) | 299 |
| TatI | WGTACW | 1 cut(s) | 1012 |
| TfiI | GAWTC | 4 cut(s) | 398, 404, 431, 535 |
| Tru1I | TTAA | 5 cut(s) | 96, 510, 606, 752, 1017 |
| Tru9I | TTAA | 5 cut(s) | 96, 510, 606, 752, 1017 |
| TseFI | GTSAC | 2 cut(s) | 514, 1042 |
| TseI | GCWGC | 1 cut(s) | 769 |
| Tsp45I | GTSAC | 2 cut(s) | 514, 1042 |
| TspDTI | ATGAA | 3 cut(s) | 125, 878, 1083 |
| Vha464I | CTTAAG | 1 cut(s) | 95 |
| XapI | RAATTY | 3 cut(s) | 506, 651, 1104 |
| XceI | RCATGY | 1 cut(s) | 134 |
| XmiI | GTMKAC | 1 cut(s) | 630 |
| XspI | CTAG | 3 cut(s) | 962, 1100, 1139 |
| ZraI | GACGTC | 1 cut(s) | 664 |
| Zsp2I | ATGCAT | 1 cut(s) | 823 |